Regulated Operon: | yqhV-spoIIIAABCDEFGH |
Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
---|---|---|---|---|---|---|
yqhV | yqgE | - | 2537689..2537970 | yqgE-BAC | ||
spoIIIAA | - | 2536690..2537613 | COG3854S | |||
spoIIIAB | - | 2536181..2536696 | ||||
spoIIIAC | - | 2535952..2536158 | spoIIIAC-BAC | |||
spoIIIAD | - | 2535544..2535945 | spoIIIAD-BAC | |||
spoIIIAE | - | 2534326..2535525 | ||||
spoIIIAF | - | 2533692..2534312 | ||||
spoIIIAG | - | 2533010..2533699 | ||||
spoIIIAH | - | 2532353..2533009 |
Operon evidence: | transcriptional fusions; Northern blotting (5.9 kb transcript) |
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Reference: | Illing N & Errington J (1991), Yoshida K, et al. (2003), Genbank U35252 |
Comments: | Transcriptional fusions showed that spoIIIA contains at least the A, B, and C genes. Northern blotting revealed a yqhV-spoIIIAABCDEFGH transcript. The promoter in front of spoIIIAA may therefore be an internal promoter. BSORF lists a spoIIIAABCDEFGH transcript, in addition to shorter spoIIIAGH and spoIIIAH transcripts. |
Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
---|---|---|---|---|---|
YlbO | Negative | ND | ND | ND |
Eichenberger P, et al. (2004): AR DB RG |
SigE | Promoter | -55:+3 | 2537640..2537697 | CATAAATAAAGAGAGGCTTGTCATAAAGTCTGCCTCACATCATACATTTTAAAGAAGC |
Illing N & Errington J (1991): RG DB PE OV |
SpoIIID | Negative | -55:+3 | 2537640..2537697 | CATAAATAAAGAGAGGCTTGTCATAAAGTCTGCCTCACATCATACATTTTAAAGAAGC |
Eichenberger P, et al. (2004): FT AR |
SigE | Promoter | -40:+14 | 2534009..2534062 | AAATAGAAATACAAGCTTCCCAGCGCGCATATATTCTAGAAGAAATGGCTGTCC |
Stragier P (2003): personal communication: PE RG Guillot C, et al. (2007): PE |
SpoIIID | Negative | -40:+14 | 2534009..2534062 | AAATAGAAATACAAGCTTCCCAGCGCGCATATATTCTAGAAGAAATGGCTGTCC |
Guillot C, et al. (2007): DB,RG,PE,HM |
Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
---|---|---|---|---|
AAAAAGCCCGCTAAACAAGCGGGCTTTTTGCGTTGCTGT >>>>>>> <<<<<<< |
spoIIIAH |
|