Transcription factor: SpoIIID

Factor type	Unique (DeoR family)
SWISS-PROT	ND
SubtiList	ND
Consensus seq.	WWRRACAR-Y
Comment	A bi-functional transcription factor which regulates temporal expression of many genes in the mother cell as well as GerE
Link to	Phylogenetic profile, Weight matrix & Motif alignment

Operon	Regulated Gene	Sigma	Regulation	Absolute position	Location	Binding seq.(cis-element)	Experimental evidence
asnO	asnO	SigE	Positive	ND	ND	ND	Eichenberger P, et al. (2004): GS AR
bofA	bofA	SigE	Negative	`29727..29756`	`-17:+13`	TCTCATAAGCTTGTACTAGAACAAGCGAAG	Ireton K & Grossman AD (1992): RG DB Halberg R, et al. (1994): FT RO Eichenberger P, et al. (2004): GS AR
bofA	bofA	SigE	Negative	`29797..29817`	`+54:+74`	TTATTTTAGGACTGGTTATTC	Ireton K & Grossman AD (1992): RG DB Halberg R, et al. (1994): FT RO Eichenberger P, et al. (2004): GS AR
cotA	cotA	SigK	Negative	ND	ND	ND	Halberg R, et al. (1995): RO
cotC	cotC	SigK	Negative	`1905237..1905307`	`-86:-16`	TCTTTTTCTATCATTTGGACAGCCCTTTTTTCCTTCTATGATTTTAACTGTCCAAGCCGCAAAATCTACTC	Ichikawa H, et al. (2000): GS FT
cotD	cotD	SigK	Negative	`2333101..2333121`	`-79:-59`	AAAGACAGCTTAATTGCACAC	Halberg R, et al. (1994): FT RO
cotD	cotD	SigK	Negative	`2333063..2333082`	`-40:-21`	CATCAGAACATGTACCCCTT	Halberg R, et al. (1994): FT RO
cotD	cotD	SigK	Negative	`2332964..2332989`	`+54:+79`	TGATGGCGCCAATTGTCCATCCTACT	Halberg R, et al. (1994): FT RO
cotF	cotF	SigK	Positive	ND	ND	ND	Eichenberger P, et al. (2004): GS AR
cotJABC-yesJK	cotJA	SigE	Positive	`755829..755858`	`-48:-19`	AAGTCGTGTTTTAGTCATAATCATGCCTCC	Henriques AO, et al. (1995): DB RG
cotT	cotT	SigK	Positive	ND	ND	ND	Eichenberger P, et al. (2004): GS AR
cotVWX	cotX	SigK	Negative	`1251201..1251230`	`-35:-7`	AGTCAAAATAAGAGGCTCGCTCATTTAATA	Ichikawa H, et al. (2000): GS FT
gerE	gerE	SigK	Positive	ND	ND	ND	Halberg R, et al. (1995): RO
gerM	gerM	SigE	Negative	ND	ND	ND	Eichenberger P, et al. (2004): GS AR
spoIID	spoIID	SigE	Negative	`3777784..3777844`	`-60:+1`	ATAAAGTTTCTGTCCAAAACGAGAGTCATATTAGCTTGTCCCTGCCCATAGACTAGACTAG	Eichenberger P, et al. (2004): FT GS AR
yqhV-spoIIIAABCDEFGH	spoIIIAA	SigE	Negative	`2537640..2537697`	`-55:+3`	CATAAATAAAGAGAGGCTTGTCATAAAGTCTGCCTCACATCATACATTTTAAAGAAGC	Eichenberger P, et al. (2004): FT AR
yqhV-spoIIIAABCDEFGH	spoIIIAG	SigE	Negative	`2534009..2534062`	`-40:+14`	AAATAGAAATACAAGCTTCCCAGCGCGCATATATTCTAGAAGAAATGGCTGTCC	Guillot C, et al. (2007): DB,RG,PE,HM
spoIVA	spoIVA	SigE	Negative	ND	ND	ND	Eichenberger P, et al. (2004): GS AR
spoIVCA	spoIVCA	SigE	Positive	`2654997..2655030`	`-47:-12`	TTAAAATCTCCTCATTTGGACAAACAGCTGTTAC	Halberg R, et al. (1994): FT RO Eichenberger P, et al. (2004): GS AR
spoIVCA	spoIVCA	SigE	Positive	`2654831..2654848`	`+137:+154`	CGACCGAGGAACAAGCGA	Halberg R, et al. (1994): FT RO Eichenberger P, et al. (2004): GS AR
spoIVCB-spoIIIC	spoIVCB	SigE	Positive	`2652918..2652938`	`-36:-16`	TACAGACACAGACAGCCTCCC	Halberg R, et al. (1994): FT RO
spoIVCB-spoIIIC	spoIVCB	SigE	Positive	`2653031..2653053`	`+78:+100`	TAAAGAGCTTGTCTTTTTAGTAT	Halberg R, et al. (1994): FT RO
spoIVCB-spoIIIC	spoIVCB	SigE	Positive	`2653062..2653086`	`+109:+133`	AAAAACAATGCCTTTCCACAACCGC	Halberg R, et al. (1994): FT RO
spoIVFAB	spoIVFA	SigE	Negative	ND	ND	ND	Eichenberger P, et al. (2004): GS AR
spoVB	spoVB	SigE	Negative	ND	ND	ND	Eichenberger P, et al. (2004): GS AR
spoVD	spoVD	SigE	Negative	`1584153..1584171`	`-33:-21`	TTCTACCTGTCCAAATTCA	Zhang B, et al. (1997): RO FT GS
spoVD	spoVD	SigE	Negative	`1584177..1584193`	`-9:+8`	AAAATGAAACAAGCCTA	Zhang B, et al. (1997): RO FT GS
murE-mraY-murD-spoVE-murG-murB-divIB-ylxWX-sbp	spoVE	SigE	Negative	`1590079..1590137`	`-38:+21`	GGGAATACAACATGTCAAACGTGTCGATAATGTTGAACAAGCAGTATCTGCGGCGTTTG	Eichenberger P, et al. (2004): FT AR
murE-mraY-murD-spoVE-murG-murB-divIB-ylxWX-sbp	spoVE	SigE	Negative	`1590218..1590276`	`-38:+21`	GGTGACATGTTTATAGATGCCGTGCATATGCTTAAGTAAGGGCTTGTCTTGAAGTAAAT	Eichenberger P, et al. (2004): FT AR
spoVK	spoVK	SigE	Positive	ND	ND	ND	Eichenberger P, et al. (2004): GS AR
spoVM	spoVM	SigE	Positive	ND	ND	ND	Levin PA, et al. (1993): DB RG
yabMNOPQ-divIC-yabR	yabP	SigE	Negative	ND	ND	ND	Eichenberger P, et al. (2004): GS AR
ybaN	ybaN	SigE	Negative	ND	ND	ND	Eichenberger P, et al. (2004): GS AR
ycgFG	ycgF	SigE	Negative	ND	ND	ND	Eichenberger P, et al. (2004): GS AR
yitE	yitE	SigE (?)	Negative	ND	ND	ND	Eichenberger P, et al. (2004): GS AR
ykvUV	ykvU	SigE	Negative	ND	ND	ND	Eichenberger P, et al. (2004): GS AR
ylbJ	ylbJ	SigE	Negative	ND	ND	ND	Eichenberger P, et al. (2004): GS AR
ypjB	ypjB	SigE	Negative	ND	ND	ND	Eichenberger P, et al. (2004): GS AR
yqfCD	yqfC	SigE	Negative	ND	ND	ND	Eichenberger P, et al. (2004): GS AR
yqfZY	yqfZ	SigE	Negative	ND	ND	ND	Eichenberger P, et al. (2004): GS AR