Regulated Operon: yraB

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
yraB adhR - 2755382..2755804
COG0789K  

Operon evidence: Northern blotting (0.6 kb transcript)
Reference: Nguyen TT, et al. (2009)
Comments:

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigA Promoter -50:+10 2755819..2755878 ACTTGTTTTGAGCTTGACTTAAAGTTAACTTTAAGTGTTACCTTCACAACATACAGGATA Nguyen TT, et al. (2009): 5' RACE
YraB Positive -40:+1 2755828..2755868 AGCTTGACTTAAAGTTAACTTTAAGTGTTACCTTCACAACA Nguyen TT, et al. (2009): GS DB

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
CATTCTTTGCGTGTGAAGAGGGCAGGTCAAAAACGAAGGATTTTGTTTCTGGCCT
   >>>>>>>>>>>>>          <<<<<<<<<<<<<<
2755342..2755378
4..40
-11.6
 yraB

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai