Regulated Operon: yrrT-mtn-yrhABC

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
yrrT
- 2787846..2788487
COG0030J  
mtn mtnN, yrrU - 2787130..2787825
COG0775F mtn-BAC pfs-STA  
yrhA
- 2785369..2786292

yrhA-BAC  
yrhB
- 2785001..2786140
COG0626E  
yrhC
- 2784688..2784918

 

Operon evidence: Northern blotting (3.9kb transcript)
Reference: Hullo MF, et al. (2007)
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigA Promoter -59:+10 2788537..2788605 ATAAAATACACAAAGTGTTTTAGTACCTGCTTTTCAGAATATGTGGTATTATAGGAACTGTTCCATCAT Auger S (2003): Thesis: PE
Even S, et al. (2006): PE
YrzC Negative +1:+50 2788497..2788546 GTTCCATCATTAATCCATAGTATACTTATAGGAATTATTAAATATGGAGT Even S, et al. (2006): GS AR RG DP
Choi SY, et al. (2006): FT
Leelakriangsak M, et al. (2007): FT

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
GAAGAAGCCGACGAATAAAAAAACAGCCATCATCAGAGATGGCTGTTTTTCTGTTATTGT
                       >>>>>>>>      <<<<<<<<
2784661..2784682
6..27
-14.9
yrhC

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai