 |
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | yrrT-mtn-yrhABC |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| yrrT | - | 2787846..2788487 | COG0030J | |||
| mtn | mtnN, yrrU | - | 2787130..2787825 | COG0775F | mtn-BAC pfs-STA | |
| yrhA | - | 2785369..2786292 | yrhA-BAC | |||
| yrhB | - | 2785001..2786140 | COG0626E | |||
| yrhC | - | 2784688..2784918 |
| Operon evidence: | Northern blotting (3.9kb transcript) |
|---|---|
| Reference: | Hullo MF, et al. (2007) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigA | Promoter | -59:+10 | 2788537..2788605 | ATAAAATACACAAAGTGTTTTAGTACCTGCTTTTCAGAATATGTGGTATTATAGGAACTGTTCCATCAT |
Auger S (2003): Thesis: PE Even S, et al. (2006): PE |
| YrzC | Negative | +1:+50 | 2788497..2788546 | GTTCCATCATTAATCCATAGTATACTTATAGGAATTATTAAATATGGAGT |
Even S, et al. (2006): GS AR RG DP Choi SY, et al. (2006): FT Leelakriangsak M, et al. (2007): FT |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| GAAGAAGCCGACGAATAAAAAAACAGCCATCATCAGAGATGGCTGTTTTTCTGTTATTGT >>>>>>>> <<<<<<<< |
yrhC |
|