Transcription factor: YrzC

Factor type	Rrf2 family
SWISS-PROT	O34527
SubtiList	BG13813
Consensus seq.	TAAWNCNNANTWNANNNATMGGAATTW
Comment	In the course of Dr. Solovieva's work, they found one difference relative to the previously reported yrzC sequence: an additional nucleotide (cytosine) between codons 89 and 90. It changes all codons starting from the position 90 and extends the ORF from 333 to 417 bp.
Link to	Phylogenetic profile, Weight matrix & Motif alignment

Operon	Regulated Gene	Sigma	Regulation	Absolute position	Location	Binding seq.(cis-element)	Experimental evidence
ytlI	ytlI	SigA	Negative	`3008800..3008850`	`-60:-10`	TTCACAAAATATATAATTCCTATTTGTTTACTAAGCTTTTATTGTTTATAC	Burguiere P, et al. (2005): DP Even S, et al. (2006): GS FT AR
ytmIJKLMNO-ytnIJ-ribR-ytnLM	ytmI	SigA	Negative	`3008805..3008846`	`-5:+37`	AAACAATAAAAGCTTAGTAAACAAATAGGAATTATATATTTT	Solovieva IM, et al. (2005): promoter mutations, riboflavin synthesis, DB OV, dot-blot analysis Burguiere P, et al. (2005): RG DB
yrrT-mtn-yrhABC	yrrT	SigA	Negative	`2788497..2788546`	`+1:+50`	GTTCCATCATTAATCCATAGTATACTTATAGGAATTATTAAATATGGAGT	Even S, et al. (2006): GS AR RG DP Choi SY, et al. (2006): FT Leelakriangsak M, et al. (2007): FT
yxeKLMNOPQ	yxeK	SigA	Negative	`4062179..4062223`	`+1:+45`	ATTCATATTAAACGACTAGGAATATAGGAGTTTATTTTTCGGATT	Even S, et al. (2006): GS AR DP
cysK	cysK	SigA	Negative	`81721..81770`	`-10:+40`	GATTATATACATAATACCAATACAAATAGTCGGAAATTGAGGTGTCGAGA	Even S, et al. (2006): GS HM AR
ssuBACD-ygaN	ssuB	SigA	Negative	`961211..961270`	`-60:-1`	TATCAAAAATCGTATTTAAAAAAGAGTTGACATATCGGAATAATTTGAATTAACATGTTA	Even S, et al. (2006): GS HM AR
yhcL	yhcL	SigA	Negative	`986899..986959`	`-60:+1`	TTGATAAGTTAAAATAATTCGCACTTGACCCATCGGAATTAGTGTAATATAGTAAATGAGA	Auger S (2003): Unpublished: GS HM Even S, et al. (2006): GS HM AR
ydbM	ydbM	None	Negative	`505088..505151`	None	AAAAATGGCAGGAAATCTATAATACATATTAAATTTATCGGAATTAAAACTGGGGGGCTGCCGG	Even S, et al. (2006): GS HM AR