Regulated Operon: yvaB

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
yvaB acpD, azoR2 - 3445442..3446077
COG1182I x0677-BAC  

Operon evidence: Northern blotting (0.7 kb transcript)
Reference: Wang S, et al. (2006), Towe S, et al. (2007)
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigA Promoter -50:+10 3446149..3446208 ATTCGAGATGTTTTACTTGAAAGTAAATTTCTTTGTCTCTATAATAAAGTCTAAGAGAGA Towe S, et al. (2007): PE
SigG Promoter -38:+38 3446075..3446150 GACAGAATAATCATTATGCATCTGTATGATAATAATTGATGTGTGATTTTTAAAAACGAAAGGGCTGGTAAAAATG Wang S, et al. (2006): AR, Race-PCR
YkvE Negative -70:-20 3446178..3446228 GGAAAGTTAAATAATCTTTAATTCGAGATGTTTTACTTGAAAGTAAATTTC Towe S, et al. (2007): AR 2D-gel GS FT

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
CTAATGAAAAAGCCTCCCCTTATTTGGGGAGGCTTTTGTTTTAGTGCT
           >>>>>>>>      <<<<<<<<
3445413..3445434
8..29
-18.7
yvaB

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai