Regulated Operon: | yvaB |
Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
---|---|---|---|---|---|---|
yvaB | acpD, azoR2 | - | 3445442..3446077 | COG1182I | x0677-BAC |
Operon evidence: | Northern blotting (0.7 kb transcript) |
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Reference: | Wang S, et al. (2006), Towe S, et al. (2007) |
Comments: |
Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
---|---|---|---|---|---|
SigA | Promoter | -50:+10 | 3446149..3446208 | ATTCGAGATGTTTTACTTGAAAGTAAATTTCTTTGTCTCTATAATAAAGTCTAAGAGAGA |
Towe S, et al. (2007): PE |
SigG | Promoter | -38:+38 | 3446075..3446150 | GACAGAATAATCATTATGCATCTGTATGATAATAATTGATGTGTGATTTTTAAAAACGAAAGGGCTGGTAAAAATG |
Wang S, et al. (2006): AR, Race-PCR |
YkvE | Negative | -70:-20 | 3446178..3446228 | GGAAAGTTAAATAATCTTTAATTCGAGATGTTTTACTTGAAAGTAAATTTC |
Towe S, et al. (2007): AR 2D-gel GS FT |
Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
---|---|---|---|---|
CTAATGAAAAAGCCTCCCCTTATTTGGGGAGGCTTTTGTTTTAGTGCT >>>>>>>> <<<<<<<< |
yvaB |
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