Regulated Operon: yvqIHGFEC

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
yvqI liaI - 3397576..3397956

yvqI-BAC  
yvqH liaH - 3396872..3397549

 
yvqG liaG - 3395900..3396622

 
yvqF liaF - 3395141..3395866

x0243-BAC  
yvqE liaS - 3394062..3395144

 
yvqC liaR - 3393449..3394084

 

Operon evidence: Northern blot analysis (yvqIHGFEC: ~4 kb, yvqIH: 1.1 kb)
Reference: Mascher T, et al. (2003)
Comments: An antibiotics, bacitracin, induces both yvqIH and yvqIHGFEC operons in the wild type strain.

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
AbrB Negative -50:+1 3398956..3399006 AATCAATCTCTGATTCGTTTTGCATATCTTCCAACTTGTATAAGATGAAGA Hamon MA, et al. (2004): AR RT-PCR
Jordan S, et al. (2007): FT,RG
SigA Promoter -50:+10 3398947..3399006 AATCAATCTCTGATTCGTTTTGCATATCTTCCAACTTGTATAAGATGAAGACAAGGAAAA Mascher T, et al. (2004): PE
YvqC Positive -80:-50 3399006..3399035 TGCGAGATACGACTCCGGTCTTATATAAAA Mascher T, et al. (2003): DB,HB
Mascher T, et al. (2004): DP (This result shows candidate region which has two direct repeats, ATGGG{TCCGGT}GCGAGATACGAC{TCCGGT}CTTAT, at -89:-56.)
Jordan S, et al. (2007): FT,RG

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
GCGGCAAATGAATAAGCGGAACGGGGAAGGATTTGCGGTCAAGTCCTTCCCTTCCGCACGTATCAATTCGCAAGCTTTTCCTTTATAATA
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>    <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
3397786..3397860
-284..-210
-39.7
 yvqI
CTCGTGAATTAGGCGGCTGCTATTTGTTTGCGCCTTT
           >>>    <<<
3394413..3394422
-360..-351
-5.2
 yvqE

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai