Regulated Operon: ywdIJK

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
ywdI ipa-59d - 3895805..3896161

 
ywdJ ipa-60d - 3894463..3895785
COG2233F  
ywdK ipa-61d - 3894030..3894401
COG2363S x0444-BAC  

Operon evidence: Northern blotting (2.2 kb transcript); downstream gene is on the opposite strand
Reference: Yoshida K, et al. (2003), Presecan E, et al. (1997)
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
TnrA Negative ND 3896198..3896214 TGTCAGAAAAAATAACA Yoshida K, et al. (2003): AR HM GS

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
AAAAAGCCAATCCTCATCATATGAGTGATTGGCTTTTTTCTTATCTTG
     >>>>>>>>>>>>   <<<<<<<<<<<<<
3893994..3894021
9..36
-17.9
ywdK

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai