Transcription factor: TnrA

Factor type	MerR family
SWISS-PROT	ND
SubtiList	ND
Consensus seq.	TGTNA-------TNACA
Comment	Positively regulates many genes for degrading nitrogen-containing compounds but negatively regulates glnR. Binds to the same sequence with GlnR (repressor)
Link to	Phylogenetic profile, Weight matrix & Motif alignment

Operon	Regulated Gene	Sigma	Regulation	Absolute position	Location	Binding seq.(cis-element)	Experimental evidence
alsT	alsT	None	Negative	`1938864..1938880`	None	TGTTAAAAAATCTAACA	Yoshida K, et al. (2003): AR HM GS
citB	citB	SigA	Positive	ND	ND	ND	Blencke HM, et al. (2006): RG
degSU	degU	SigA	Negative	`3645439..3645455`	-57..-41	TGGAAGGAACGATGACA	Yasumura A, et al. (2008): RG NB DP DB SDM
gabP	gabP	SigA	Positive	`686651..686667`	`-60:-44`	TGGTATATTTTCTTACA	Ferson AE, et al. (1996): DB DP
glnQHMP	glnQ	None	Positive	`2801879..2801895`	None	GGGTATATTTTCTGACA	Yoshida K, et al. (2003): AR HM GS
glnRA	glnR	SigA	Negative	`1877877..1877893`	`-58:-42`	TGTTAAGAATCCTTACA	Wray LV Jr, et al. (1996): DB
glnRA	glnR	SigA	Negative	`1877900..1877916`	`-35:-19`	TGACACATAATATAACA	Wray LV Jr, et al. (1996): DB
gltAB	gltA	SigA	Negative	`2014663..2014688`	`+1:+26`	AGAGTTGTTAGATTTTATGACCGGTA	Belitsky BR, et al. (2000): FT Yoshida K, et al. (2003): AR HM GS
ilvBHC-leuABCD	ilvB	SigA	Negative	`2897632..2897681`	`-210:-193`	CATATACGAACCATATCGTGTTATAAAATCTTCCATGTTTATATAAAATT	Tojo S, et al. (2004): FT
nasA	nasA	SigA	Positive	`362838..362856`	`-58:-42`	GTGTCACAAAAACTTACAC	Nakano MM, et al. (1995): DP SDM Yoshida K, et al. (2003): AR HM GS
nasBCDEF	nasB	SigA	Positive	`362838..362856`	`-58:-42`	GTGTAAGTTTTTGTGACAC	Nakano MM, et al. (1995): DP SDM Yoshida K, et al. (2003): AR HM GS
nasBCDEF	nasD	None	Positive	`358250..358266`	`-55:-39`	TGTTACATTTTATAACA	Nakano MM, et al. (1998): RG DB Yoshida K, et al. (2003): AR HM GS
nrgAB	nrgA	SigA	Positive	`3756688..3756704`	`-57:-41`	TGTCAGGAAATCTTACA	Wray LV Jr, et al. (1996): RG DB Yoshida K, et al. (2003): AR HM GS
oppABCDF	oppA	None	Positive	`1219618..1219634`	None	TGGAAGAAAAACTAACG	Yoshida K, et al. (2003): AR HM GS
pel	pel	None	Negative	`827950..827966`	None	TGGAATAAAATCTCACA	Yoshida K, et al. (2003): AR HM GS
ptb-bcd-buk-lpdV-bkdAABB	ptb	SigL	Negative	ND	ND	ND	Debarbouille M, et al. (1999): RG
pucRJKLM	pucJ	SigA	Positive	`3330362..3330378`	`-113:-97`	TGTTACATTTTCTTACA	Yoshida K, et al. (2003): AR HM GS
tnrA	tnrA	None	Positive	`1397808..1397824`	None	TGTTAGAAAATATGACA	Robichon D, et al. (2000): DE DP
yccC	yccC	SigA	Positive	`290828..290851`	`-60:-37`	TACTGAGAGAAAAGCTGACTGATC	Fisher SH & Wray LV Jr (2002): FT GS
ycsFGI-kipIAR-ycsK	ycsF	None	Positive	ND	ND	ND	Wang L, et al. (1997): DB
ykzB-ykoL	ykzB	None	Positive	`1397851..1397867`	`-57:-41`	CGGAAGAAAAATTAACA	Robichon D, et al. (2000): PE DB DP
yodF	yodF	None	Negative	`2130116..2130132`	None	TGTGATCTTTTCTTACA	Yoshida K, et al. (2003): AR HM GS
yttA	yttA	None	Negative	`3108551..3108567`	None	CGTGAAAAAATCTAACA	Yoshida K, et al. (2003): AR HM GS
ywdIJK	ywdI	None	Negative	`3896198..3896214`	None	TGTCAGAAAAAATAACA	Yoshida K, et al. (2003): AR HM GS
ywlFG	ywlF	None	Negative	`3791786..3791802`	None	TGTCAGAAAATCTGCAA	Yoshida K, et al. (2003): AR HM GS
ywrD	ywrD	None	Positive	`3720778..3720794`	None	CGTCAGTTTTTCTGCCG	Yoshida K, et al. (2003): AR HM GS
yxkC	yxkC	SigD	Negative	`3989201..3989217`	None	TCGTACATTTTATTACA	Yoshida K, et al. (2003): AR HM GS
yycCB	yycC	None	Negative	`4159511..4159527`	None	TGTGACATCTTCTTACA	Yoshida K, et al. (2003): AR HM GS