 |
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | ywsC-ywtABC |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| ywsC | pgsB, capB | - | 3698473..3699654 | x0075-STA capB-STA x0075-STA | ||
| ywtA | pgsC, capC | - | 3698009..3698458 | |||
| ywtB | pgsAA, pgsA, capA | - | 3696848..3697990 | pgsA-BAC pgsA-STA-1 pgsA-STA-2 pgsA-STR pgsA-STA-1 | ||
| ywtC | pgsE, capE | - | 3696666..3696833 |
| Operon evidence: | Northern blotting (3.0 kb transcript) |
|---|---|
| Reference: | Urushibata Y, et al. (2002), Genbank Z92954 |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| DegU | Positive | -47:-23 | 3700687..3700711 | ACATAATGCCGATTGAGAATTCATA |
Ohsawa T, et al. (2009): GS FT |
| DegU | Positive | -47:-23 | 3700687..3700711 | ACATAATGCCGATTGAGAATTCATA |
Ohsawa T, et al. (2009): GS FT |
| SigA | Promoter | -50:+10 | 3700655..3700714 | GTTACATAATGCCGATTGAGAATTCATAGTGATTCTATATACTGATGAATGAATTTACAA |
Ohsawa T, et al. (2009): PE |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AAAAAGAGAGTGTCTGATGAGACACTCTCTTTTTATTTGCCCAG >>>>>>>>>> <<<<<<<<<< |
ywtB |
|