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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai |
| Regulated Operon: | yxaAB |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Conserved groups |
|---|---|---|---|---|---|---|
| yxaA | - | 4111097..4112245 | ||||
| yxaB | - | 4110949..4111980 | COG5039GM |
| Operon evidence: | Northern blotting (2.4 kb transcript; RT-PCR |
|---|---|
| Reference: | Yoshida K, et al. (2000), Nagorska K, et al. (2008) |
| Comments: | Internal promoter in front of yxaB, leading to a 1.0 kb monocistronic transcript. |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| AbrB | Negative | -68:-21 | 4113282..4113329 | TTTTTATTTAAATTTTTACCATATTGCATGGTATGTATTTCCAGATCA |
Nagorska K, et al. (2008): DB RG FT |
| SigA | Promoter | -43:+8 | 4113254..4113304 | GCATGGTATGTATTTCCAGATCAATTATGGTACATTGGAGATCAATAGGTT |
Nagorska K, et al. (2008): 5' RACE |
| SigB | Promoter | -48:+11 | 4112012..4112070 | GATGCACATGCCAATGCATAGCCATCCTTCTTTTTGGGTAGAGACAGTTAACACACAAT |
Nagorska K, et al. (2008): 5' RACE, DB RG |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AAAAAGACTGCCCTCCCCCGGGGCAGTCTTTCTTTGTTAAATA >>>>>>>>> <<<<<<<<< |
yxaB |
|