We scaned AhrC binding sites at upstream reagion of the ortholog genes by PSSM.
| Transcription Factor | Regulatec gene | organism | position | cis-element | socre |
|---|
| AhrC | argC | Bsu | -82..-93 | ATTTTTATTCAT | 14.2 |
|---|
| AhrC | argC | Cac | -119..-130 | AATTTTATTGAT | 9.4 |
|---|
| AhrC | argC | Lla | -21..-32 | ATTTTTATACAC | 10.1 |
|---|
| AhrC | argC | Mle | -12..-23 | ATAATTATTCAT | 8.5 |
|---|
| AhrC | argC | Eco | -95..-106 | ATTTTTATTCAT | 14.2 |
|---|
| AhrC | argC | EcZ | -95..-106 | ATTTTTATTCAT | 14.2 |
|---|
| AhrC | argC | Ecs | -95..-106 | ATTTTTATTCAT | 14.2 |
|---|
| AhrC | argC | Ype | -187..-198 | ATTTTTATTCAT | 14.2 |
|---|
| AhrC | argC | Nos | -236..-247 | ATTTTTATTCAC | 11.5 |
|---|
| AhrC | argC | Tma | -154..-165 | AATTATTTTCAT | 8.4 |
|---|
| AhrC | rocA | Bsu | -40..-51 | ATTTTTATTCAT | 14.2 |
|---|
| AhrC | rocA | Bha | -125..-136 | ATTTTTAATCAT | 11.2 |
|---|
| AhrC | rocA | Lla | -148..-159 | TTTTTTCTTCAG | 8.9 |
|---|
| AhrC | rocA | Spn | -116..-127 | ATTTTTATTGAG | 9.9 |
|---|
| AhrC | rocA | Lin | -141..-152 | ACTTTTATTGAT | 8.1 |
|---|
| AhrC | rocA | Eco | -142..-153 | ATTTTTATAAAT | 10.7 |
|---|
| AhrC | rocA | EcZ | -37..-48 | AATATTATTCAT | 9.8 |
|---|
| AhrC | rocA | Ecs | -37..-48 | AATATTATTCAT | 9.8 |
|---|
| AhrC | rocA | Ype | -42..-53 | TTTTATATACAG | 9.1 |
|---|
| AhrC | rocA | Sty | -183..-194 | ATTTTTATTCTG | 10.3 |
|---|
| AhrC | rocA | Pae | -136..-147 | ATTTTTAATAAT | 9.1 |
|---|
| AhrC | rocA | Pmu | -45..-56 | AATTATATTCAA | 8.7 |
|---|
| AhrC | rocA | Nme | -81..-92 | ATTTTTGTTAAT | 9.1 |
|---|
| AhrC | rocA | Atu | -73..-84 | TTTTTTATCCAG | 9.2 |
|---|
| AhrC | rocA | Syn | -195..-206 | ATCTATAATCAT | 8.9 |
|---|
| AhrC | rocA | Aae | -8..-19 | AATTTTATTAAG | 9.8 |
|---|
| AhrC | rocA | Fnu | -88..-99 | TTTTTTATTTAT | 9.4 |
|---|
| AhrC | rocD | Bsu | -50..-61 | ATTTATATAAAG | 8.4 |
|---|
| AhrC | rocD | Sau | -36..-47 | ATCTTTATTAGT | 8.2 |
|---|
| AhrC | rocD | Eco | -54..-65 | TTTTTTATGCAT | 10.1 |
|---|
| AhrC | rocD | EcZ | -54..-65 | TTTTTTATGCAT | 10.1 |
|---|
| AhrC | rocD | Ecs | -54..-65 | TTTTTTATGCAT | 10.1 |
|---|
| AhrC | rocD | Pmu | -69..-80 | ATATTTATTCAT | 11.5 |
|---|
| AhrC | rocD | Bme | -237..-248 | TTCTTTTTTCAT | 8.9 |
|---|
| AhrC | rocD | Nos | -70..-81 | ATTTTTATTTAT | 10.8 |
|---|
position : counted from translation start site.