We scaned CodY binding sites at upstream reagion of the ortholog genes by PSSM.
| Transcription Factor | Regulatec gene | organism | position | cis-element | socre |
|---|
| CodY | acsA | Lla | -199..-209 | AAAAATTATGA | 10.4 |
|---|
| CodY | acsA | Lin | -93..-103 | AAAAAATCTGT | 9.9 |
|---|
| CodY | acsA | Pae | -255..-265 | AAAAAGGCTGC | 9.5 |
|---|
| CodY | acsA | Pmu | -121..-131 | AAAAATGCTGA | 12.2 |
|---|
| CodY | acsA | Hpy | -187..-197 | AAAAAGGGTGA | 9.3 |
|---|
| CodY | citB | Dra | -229..-239 | AAAAATACGGT | 10 |
|---|
| CodY | comK | Bsu | -68..-78 | AAAAAACCTGT | 10.4 |
|---|
| CodY | comK | NmA | -4..-14 | AAAAAGGATGA | 10.7 |
|---|
| CodY | dppA | Bsu | -7..-17 | AAAAAGGAGGA | 10.1 |
|---|
| CodY | gabP | Sau | -2..-12 | AAAAAGGGTGA | 9.3 |
|---|
| CodY | gabP | Lin | -185..-195 | AAAAAGTTTGT | 9.1 |
|---|
| CodY | gabP | Mge | -194..-204 | AAAAAAGATGA | 10.2 |
|---|
| CodY | gabP | Sty | -241..-251 | AAAAATCCTGA | 12.2 |
|---|
| CodY | gabP | Fnu | -96..-106 | AAAAAGATGGA | 9.6 |
|---|
| CodY | hag | Ccr | -148..-158 | AAAAATCCTGT | 11.1 |
|---|
| CodY | srfAA | Bsu | -272..-282 | AAAAATATTGA | 10.4 |
|---|
| CodY | srfAA | MtC | -20..-30 | AACAATCCTGA | 9.3 |
|---|
| CodY | srfAA | Nos | -88..-98 | AAAAATTATGA | 10.4 |
|---|
| CodY | ureA | Bha | -121..-131 | AAAAAATAGGA | 9.1 |
|---|
| CodY | ureA | Hin | -77..-87 | AAAAATTCTGA | 11.7 |
|---|
position : counted from translation start site.