Transcription factor: CodY

Factor type Unique(MITOCH-CARRIER)
SWISS-PROT P39779
SubtiList BG10968
Consensus seq. No consensus seq has been deduced: A+T rich stretch?
Comment transcriptional regulator
negative regulation of srfA and comK genes (in the presence of casamino-acids), dpp operon
Link toPhylogenetic profile , Weight matrix & Motif alignment

Regulated
gene
Operon Sigma Regulation Absolute position Location Binding seq.(cis-element) Exp. Reference Year
acsA ND ND Negative ND ND ND
Unknown Fisher SH 1999
citB ND ND Negative ND -6:+27 ND
beta-gal, FT Kim, H. J., et al. 2002
citB ND ND Negative ND -83:-43 ND
beta-gal, FT Kim, H. J., et al. 2002
comK ND ND Negative 1116300..1116364 -77:+13 AAATATCATTAAAAGATGATTTTATCTTAAATGTTAAAAAAACCTGTCGT
TTTACAAAAACAGAT
DB FT GS Serror P, et al. 1996
dppA dppA-dppB-dppC-dppD-dppE;depeptide permerase operon ND Negative 1359665..1359702 -6:+30 ATTTGTTAGAATATTCATAATTTAGTAAAAAAGGAGGA
GS FT Serror P, et al. 1996
gabP gabP-P1 SigA Negative ND ND ND
DB DP Ferson AE, et al. 1996
hag ND SigD Negative ND ND ND
ND Bergara, F., et al. 2003
hutP hutPHUIGM operon;hutO-CR1 ND Negative 4040466..4040491 -3:+23 CTCAGTTAATAGTTATCAGAATTTTT
DB DP Fisher SH, et al. 1996
ilvA ilvA-ypmP ND Negative ND ND ND
AR, beta-gal, ChIP-on-chip
Northern blod
Molle V, et al.
Mader U, et al.
2003
2004
ilvB ilvB-ilvH-ilvC-leuA-leuB-leuC-leuD ND Negative ND ND ND
AR, beta-gal, ChIP-on-chip
Northern blod
Molle V, et al.
Mader U, et al.
2003
2004
ilvD ilvD ND Negative ND ND ND
AR, beta-gal, ChIP-on-chip
Northern blod
Molle V, et al.
Mader U, et al.
2003
2004
ptb ptb-bcd-buk-lpdV-bkdA1-bkdA2-bkdB operon(bkd operon) ND Negative ND ND ND
beta-gal Debarbouille M et al. 1999
rapC rapC-phrC ND Negative ND ND ND
beta-gal Lazazzera BA et al. 1999
srfAA srfAAB-comS-srfACD SigA Negative 376197..376283 -38:+49 CGGTGATAAAAACATTTTTTTCATTTAAACTGAACGGTAGAAAGATAAAA
AATATTGAAAACAATGAATAAATAGCCAAAATTGGTT
DB FT GS Wray LV Jr, et al. 1996
ureA ureABC SigA Negative ND ND ND
DP DB Debarbouille M et al. 1997
ybgE ybgE ND Negative ND ND ND
AR, beta-gal, ChIP-on-chip
Northern blod
Molle V, et al.
Mader U, et al.
2003
2004




Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2004
Contact: knakai@ims.u-tokyo.ac.jp