We scaned CtsR binding sites at upstream reagion of the ortholog genes by PSSM.
| Transcription Factor | Regulatec gene | organism | position | cis-element | socre |
|---|
| CtsR | clpE | Bsu | -144..-160 | GGTCAAAGATAGTCAAA | 22.9 |
|---|
| CtsR | clpE | Bha | -71..-87 | AGTCAAAGATAGTCAAA | 22.5 |
|---|
| CtsR | clpE | Lla | -78..-94 | GGTCAGTAATGGTCAAA | 16.7 |
|---|
| CtsR | clpE | Spy | -42..-58 | AGTCAAAAATGGTCAAA | 21.2 |
|---|
| CtsR | clpE | Spn | -42..-58 | GGTCAAAAATAGTCAAA | 20.6 |
|---|
| CtsR | clpE | Sau | -58..-74 | GGTCGAAGATAGCAAAT | 9.7 |
|---|
| CtsR | clpE | jHp | -28..-44 | AGTGTAAAATAGTAAAA | 9.3 |
|---|
| CtsR | clpE | Syn | -251..-267 | AGTCAAACTTAGTGAAA | 13.4 |
|---|
| CtsR | clpE | Nos | -26..-42 | AGTCACCCAAAGTCCAA | 9 |
|---|
| CtsR | clpP | Bsu | -54..-70 | GGTCAATAAAGGTCAAA | 18.8 |
|---|
| CtsR | clpP | Bha | -78..-94 | GGTCAAAGAAGGTCAAA | 22.9 |
|---|
| CtsR | clpP | Lla | -90..-106 | GGTCAAAAAAGGTCAAA | 20.6 |
|---|
| CtsR | clpP | Spy | -105..-121 | GGTCAATAAAGGTCAAA | 18.8 |
|---|
| CtsR | clpP | Spn | -69..-85 | GGTCAAAAAAGGTCAAA | 20.6 |
|---|
| CtsR | clpP | Lin | -61..-77 | GGTCGAAAATGGTCAAA | 18.5 |
|---|
| CtsR | clpP | Cgl | -55..-71 | TGGCAATGATAGACCAA | 9 |
|---|
| CtsR | clpP | Syn | -222..-238 | GGTCAAAATTGGCCAGT | 12.3 |
|---|
| CtsR | ctsR | Bsu | -23..-39 | AGTCAAATATAGTCAAA | 20.2 |
|---|
| CtsR | ctsR | Bha | -71..-87 | GGTCAAAGATAGTCAAA | 22.9 |
|---|
| CtsR | ctsR | Cac | -30..-46 | AGTCAAAGAAAGTCAAA | 21.5 |
|---|
| CtsR | ctsR | Lla | -39..-55 | AGTCAGTAATAGTCAAA | 15.3 |
|---|
| CtsR | ctsR | Spy | -61..-77 | AGTCAGTTTTAGTCAAA | 13.5 |
|---|
| CtsR | ctsR | Spn | -27..-43 | AGTCAAACAAGGTCAAG | 16 |
|---|
| CtsR | ctsR | Lin | -41..-57 | AGTCAAAAATAGTCAAA | 20.2 |
|---|
| CtsR | ctsR | Ype | -42..-58 | GATCAATAATACTCAAT | 9.4 |
|---|
| CtsR | ctsR | Hin | -105..-121 | GGTCAAAATTCGCAAAA | 9.7 |
|---|
| CtsR | trxA | Sau | -38..-54 | AATAAAATATGGTTAAA | 10.8 |
|---|
| CtsR | trxA | Mpu | -90..-106 | ATTCAAAAATAATAAAA | 10 |
|---|
| CtsR | trxA | Cgl | -251..-267 | GGTCAAAGAGAGTTATC | 10.3 |
|---|
| CtsR | trxA | Mle | -99..-115 | AGTCCATGCTAACCAAA | 9 |
|---|
| CtsR | trxA | Eco | -15..-31 | GGTGAAATAAAGTCAAC | 12.6 |
|---|
| CtsR | trxA | EcZ | -15..-31 | GGTGAAATAAAGTCAAC | 12.6 |
|---|
| CtsR | trxA | Ecs | -15..-31 | GGTGAAATAAAGTCAAC | 12.6 |
|---|
| CtsR | trxA | Sty | -32..-48 | CAACAAAGTTAGTCACA | 9.7 |
|---|
| CtsR | trxA | Hin | -42..-58 | CGTAAAAAATAGGCAAA | 10.8 |
|---|
| CtsR | trxA | Xfa | -41..-57 | AGACAATAAACGTCCAA | 9.1 |
|---|
| CtsR | trxA | Cje | -40..-56 | AGCAAAAGTTAGTTAAA | 9.8 |
|---|
| CtsR | trxA | Mlo | -257..-273 | GGTCCACGGCGGTCACA | 9.4 |
|---|
position : counted from translation start site.