We scaned DegU binding sites at upstream reagion of the ortholog genes by PSSM.
| Transcription Factor | Regulatec gene | organism | position | cis-element | socre |
|---|
| DegU | aprE | Bsu | -223..-241 | AAAAAGCATGACATTTCAG | 11 |
|---|
| DegU | aprE | Bha | -166..-186 | AAAATGGAGCGACTCATTCAG | 11 |
|---|
| DegU | aprE | Cac | -183..-203 | AAAAGCTTATAATCTTTTCGG | 9.6 |
|---|
| DegU | aprE | Mtu | -169..-188 | ATAATGAAAATCATGTTCAG | 9.8 |
|---|
| DegU | aprE | MtC | -26..-44 | AGAACCGGCTACCGTTCCG | 9.3 |
|---|
| DegU | aprE | Sty | -196..-214 | AAAACTCTAAATAGTTCGG | 9.6 |
|---|
| DegU | aprE | Nos | -125..-143 | AGAAAGATGCACAATTTAG | 9.3 |
|---|
| DegU | aprE | Fnu | -134..-152 | AGAAGATTACAATATTCAA | 9.4 |
|---|
| DegU | aprE | Dra | -125..-143 | AGAGAAAAGTGGTGTTCGG | 9.3 |
|---|
| DegU | comC | Bsu | -105..-124 | AGAATCTTTTTTTGATTCTG | 10.2 |
|---|
| DegU | comC | Sau | -75..-95 | AGAATTACAATTATTATTCAT | 9.4 |
|---|
| DegU | comEA | Nme | -48..-68 | AGAAAACCCCCGATTATTCGG | 11.3 |
|---|
| DegU | comEA | NmA | -8..-28 | AGAAAACCCCCGATTATTCGG | 11.3 |
|---|
| DegU | comFA | Bha | -70..-88 | AGAACACACTCCCACTCAG | 9.1 |
|---|
| DegU | comFA | Sty | -10..-28 | TGAAAGTGTTCACGTTCAG | 10 |
|---|
| DegU | comFA | Nos | -243..-262 | AGAACTTATAACATCCTCAG | 9.1 |
|---|
| DegU | comGA | Bsu | -91..-110 | AGAAAGAATTGGTTTTTCAG | 12.7 |
|---|
| DegU | comGA | Bha | -81..-100 | AGTATGACTAATTGGTTCAG | 9.1 |
|---|
| DegU | comGA | Lla | -43..-63 | AAAATGTCGAAAAATTTTCGG | 9.6 |
|---|
| DegU | comGA | Spy | -46..-65 | AGAAAATATCACTTCTTCTG | 10.2 |
|---|
| DegU | comGA | Cgl | -15..-35 | AGAACGACCAAGAGGTTACAG | 9.1 |
|---|
| DegU | comGA | NmA | -249..-267 | AGGAAGAAAAAGTTTTCAG | 9.1 |
|---|
| DegU | comGA | Fnu | -125..-144 | AGAATTCGCTGCAAATTCAG | 12.7 |
|---|
| DegU | degU | Bha | -30..-50 | AGAATGAAAGTATAGCTTCAT | 9.4 |
|---|
| DegU | degU | Cac | -96..-116 | AAATCATGTAAAATTTTTCAG | 9.5 |
|---|
| DegU | degU | Sau | -70..-89 | AGACTGTCATTTGCGTTCAG | 9.4 |
|---|
| DegU | degU | Cgl | -19..-38 | AGAAAACACCTGATCTTCAT | 9.4 |
|---|
| DegU | degU | Mtu | -181..-201 | TGAACAGCCGTAGAAGTTCAG | 10 |
|---|
| DegU | degU | MtC | -46..-66 | TGAACAGCCGTAGAAGTTCAG | 10 |
|---|
| DegU | degU | Eco | -209..-227 | AAAAATTGACTTTATTCAG | 11 |
|---|
| DegU | degU | EcZ | -209..-227 | AAAAATTACCTTTATTCAG | 11 |
|---|
| DegU | degU | Ecs | -209..-227 | AAAAATTACCTTTATTCAG | 11 |
|---|
| DegU | degU | Ype | -191..-210 | AGATTGAAACCGTGATTCAG | 11.2 |
|---|
| DegU | degU | Pae | -84..-104 | AAAATTCACGGTCACTTTCAG | 11 |
|---|
| DegU | degU | Xfa | -12..-30 | AGAAAACTATCTGATTCAG | 12.7 |
|---|
| DegU | degU | Rso | -236..-256 | AGAACGGGGCGGATGGTTCCG | 9.3 |
|---|
| DegU | degU | Atu | -93..-113 | AAAATCCAGACCGCAATTCAG | 11 |
|---|
| DegU | degU | Bme | -142..-162 | AGAATCTCAAACATGATGCAG | 9.1 |
|---|
| DegU | degU | Mlo | -12..-32 | AAAATCATCGACGGGATTCGG | 9.6 |
|---|
| DegU | degU | Syn | -80..-100 | AAAATTTATCCTATGGTTCGG | 9.6 |
|---|
| DegU | degU | Nos | -255..-274 | AGAATTCGATGCCTATGCAG | 9.1 |
|---|
| DegU | degU | Dra | -78..-97 | AGAAAGTCTTTACGTTTCCG | 9.3 |
|---|
| DegU | mecA | Bsu | -116..-135 | AGAAATACAAAGGAATTCAC | 9.8 |
|---|
| DegU | mecA | Spn | -6..-24 | AGTAACCTCATACTTTCAG | 9.1 |
|---|
| DegU | mecA | Mtu | -8..-26 | AGTATATCCGTACGTTCAG | 9.1 |
|---|
| DegU | mecA | MtC | -8..-26 | AGTATATCCGTACGTTCAG | 9.1 |
|---|
| DegU | sacX | Bsu | -21..-40 | ACAAGCCGACTTTTCTTCAG | 10.2 |
|---|
| DegU | sacX | Bha | -229..-247 | TGAATCTCTACCGTTTCAG | 10 |
|---|
| DegU | sacX | Cac | -78..-96 | AGAGTACTTCCTTTTTCAG | 10.7 |
|---|
| DegU | sacX | Spy | -220..-238 | ACAATAGTTGCTCTTTCAG | 10.2 |
|---|
| DegU | sacX | Mpu | -41..-60 | TGAAAACAACACCCGTTCAG | 10 |
|---|
| DegU | sacX | Eco | -92..-112 | AGATCACAATTTATCGTTCAG | 11.2 |
|---|
| DegU | sacX | EcZ | -92..-112 | AGATCACAATTTATCGTTCAG | 11.2 |
|---|
| DegU | sacX | Ecs | -92..-112 | AGATCACAATTTATCGTTCAG | 11.2 |
|---|
| DegU | sacX | Bsu | -21..-40 | ACAAGCCGACTTTTCTTCAG | 10.2 |
|---|
| DegU | sacX | Bha | -229..-247 | TGAATCTCTACCGTTTCAG | 10 |
|---|
| DegU | sacX | Cac | -78..-96 | AGAGTACTTCCTTTTTCAG | 10.7 |
|---|
| DegU | sacX | Spy | -220..-238 | ACAATAGTTGCTCTTTCAG | 10.2 |
|---|
| DegU | sacX | Mpu | -41..-60 | TGAAAACAACACCCGTTCAG | 10 |
|---|
| DegU | sacX | Eco | -92..-112 | AGATCACAATTTATCGTTCAG | 11.2 |
|---|
| DegU | sacX | EcZ | -92..-112 | AGATCACAATTTATCGTTCAG | 11.2 |
|---|
| DegU | sacX | Ecs | -92..-112 | AGATCACAATTTATCGTTCAG | 11.2 |
|---|
| DegU | srfAA | Bsu | -165..-184 | AGAAATAATACTATATTCAA | 9.4 |
|---|
| DegU | srfAA | MtC | -148..-168 | AAATCCCTTGTGTCACTTCAG | 9.5 |
|---|
| DegU | srfAA | Sty | -57..-77 | AGAAGCGGGCCTCGCTGTCAG | 9.1 |
|---|
| DegU | srfAA | Atu | -120..-139 | AAATTGAAGACCGGTTTCAG | 9.5 |
|---|
| DegU | wapA | Eco | -72..-91 | AGAAACGGGTGTCTGTTTAG | 9.3 |
|---|
position : counted from translation start site.