We scaned GerE binding sites at upstream reagion of the ortholog genes by PSSM.
| Transcription Factor | Regulatec gene | organism | position | cis-element | socre |
|---|
| GerE | cotA | Xfa | -70..-79 | GTTTAGGCGT | 8.6 |
|---|
| GerE | cotA | Nme | -161..-170 | AAATAGGCTG | 8.5 |
|---|
| GerE | cotA | NmA | -160..-169 | AAATAGGCTG | 8.5 |
|---|
| GerE | cotA | Mlo | -69..-78 | ATATCGGCAT | 8.6 |
|---|
| GerE | ftsY | Sau | -80..-89 | ATTTGGGCTT | 9.1 |
|---|
| GerE | spoIVCB | Bsu | -30..-39 | ATATAGGCTT | 10.3 |
|---|
| GerE | spoIVCB | Cac | -168..-177 | AATTGGGCAT | 8.6 |
|---|
| GerE | yqeE | Bha | -64..-73 | AAATAGGCCT | 9.9 |
|---|
| GerE | yqeE | Cac | -35..-44 | ATGTAGGCAA | 9.3 |
|---|
| GerE | yqeE | Vch | -217..-226 | AAATGGGCTT | 9.5 |
|---|
| GerE | yqeE | Bme | -264..-273 | ATATCGGCAA | 8.5 |
|---|
| GerE | yqeE | Nos | -148..-157 | ATGTAGGCGG | 9 |
|---|
| GerE | yqeE | Dra | -53..-62 | GCATGGGCGT | 8.3 |
|---|
| GerE | yqeE | Bha | -64..-73 | AAATAGGCCT | 9.9 |
|---|
| GerE | yqeE | Cac | -35..-44 | ATGTAGGCAA | 9.3 |
|---|
| GerE | yqeE | Vch | -217..-226 | AAATGGGCTT | 9.5 |
|---|
| GerE | yqeE | Bme | -264..-273 | ATATCGGCAA | 8.5 |
|---|
| GerE | yqeE | Nos | -148..-157 | ATGTAGGCGG | 9 |
|---|
| GerE | yqeE | Dra | -53..-62 | GCATGGGCGT | 8.3 |
|---|
position : counted from translation start site.