We scaned GlnR binding sites at upstream reagion of the ortholog genes by PSSM.
| Transcription Factor | Regulatec gene | organism | position | cis-element | socre |
|---|
| GlnR | glnR | Bsu | -67..-83 | TGTTAAGAATCCTTACA | 15.4 |
|---|
| GlnR | glnR | Bha | -95..-111 | TGTAAGAAAATCTAACA | 13.9 |
|---|
| GlnR | glnR | Lla | -58..-74 | TGTGAGAAAATCTCACA | 13.8 |
|---|
| GlnR | glnR | Spn | -61..-77 | TGTTATAAAATGTAACA | 13.8 |
|---|
| GlnR | glnR | Sau | -70..-86 | TGGGAATAAACAATACA | 9.5 |
|---|
| GlnR | glnR | Lin | -54..-70 | AGTCAAATAAAAAAACA | 9.6 |
|---|
| GlnR | glnR | Sty | -63..-79 | TGCTAAAAGATTTTACA | 10.5 |
|---|
| GlnR | glnR | Syn | -66..-82 | TGTAACAAACTATATCA | 9.8 |
|---|
| GlnR | nasA | Bsu | -83..-99 | TGTCACAAAAACTTACA | 20.5 |
|---|
| GlnR | nasA | Bha | -65..-81 | TGGGAGGATATCTTACA | 9.6 |
|---|
| GlnR | nasA | Eco | -169..-185 | TGTTACTAAATGTAACT | 11.2 |
|---|
| GlnR | nasA | EcZ | -169..-185 | TGTTACTAAATGTAACT | 11.2 |
|---|
| GlnR | nasA | Ecs | -169..-185 | TGTTACTAAATGTAACT | 11.2 |
|---|
| GlnR | nasA | Aae | -236..-252 | TATCAAATAATTTGACA | 9.5 |
|---|
| GlnR | nasB | Bsu | -83..-99 | TGTCACAAAAACTTACA | 20.5 |
|---|
| GlnR | nasB | Ype | -113..-129 | TATCAAAAAAGCTTAAA | 11.6 |
|---|
| GlnR | ureA | Bha | -81..-97 | TGTTAGAAAAGATTACA | 15.1 |
|---|
position : counted from translation start site.