We scaned RocR binding sites at upstream reagion of the ortholog genes by PSSM.
| Transcription Factor | Regulatec gene | organism | position | cis-element | socre |
|---|
| RocR | rocA | Bsu | -199..-213 | GCAAAATAATTTTGC | 21 |
|---|
| RocR | rocA | Sau | -202..-216 | GCAAAATACAATAGC | 10.7 |
|---|
| RocR | rocA | Lin | -237..-251 | GCATTATAAATATGC | 10.9 |
|---|
| RocR | rocA | Eco | -20..-34 | GCAACAGAAATGTGA | 11.3 |
|---|
| RocR | rocD | Bsu | -161..-175 | GCAAAAGAATTTTGC | 20.9 |
|---|
| RocR | rocD | Bha | -158..-172 | GAAAAATAATTTTTC | 13.2 |
|---|
| RocR | rocD | MtC | -18..-32 | GCAAACTCATTCCGC | 12.2 |
|---|
| RocR | rocD | Nme | -130..-144 | TCAAAAAAATTTCGA | 10.1 |
|---|
| RocR | rocD | Nos | -141..-155 | GGAAAATAATTTTGT | 13.4 |
|---|
| RocR | rocR | Bsu | -68..-82 | GCAAAAGAATTTTGC | 20.9 |
|---|
| RocR | rocR | Bha | -102..-116 | GAAAAATAATTTTTC | 13.2 |
|---|
position : counted from translation start site.