We scaned TnrA binding sites at upstream reagion of the ortholog genes by PSSM.
| Transcription Factor | Regulatec gene | organism | position | cis-element | socre |
|---|
| TnrA | alsT | Bsu | -46..-62 | TGTTAAAAAATCTAACA | 19.3 |
|---|
| TnrA | alsT | Bha | -135..-151 | TGGTAGATAATCTGACA | 16.1 |
|---|
| TnrA | alsT | Nme | -274..-290 | CCGTAAAAAATCTGACA | 10.4 |
|---|
| TnrA | alsT | NmA | -274..-290 | CCGTAAAAAATCTGACA | 10.4 |
|---|
| TnrA | gabP | Bsu | -88..-104 | TGTAAGAAAATATACCA | 19 |
|---|
| TnrA | gabP | Lla | -42..-58 | TGGTATAATAATTAACA | 10.4 |
|---|
| TnrA | glnQ | Bsu | -13..-29 | TATCAGAAAATTTGACC | 11.6 |
|---|
| TnrA | glnQ | Cac | -159..-175 | AGGTATAAAAAATACCA | 10.2 |
|---|
| TnrA | glnQ | Spy | -82..-98 | TGTCATAAAACATAACA | 17.2 |
|---|
| TnrA | glnQ | Spn | -76..-92 | TGTCAGAAAATATAACA | 21.4 |
|---|
| TnrA | glnR | Bsu | -66..-82 | TGTTAGAAAATATGACA | 19.2 |
|---|
| TnrA | glnR | Bha | -95..-111 | TGTAAGAAAATCTAACA | 22 |
|---|
| TnrA | glnR | Cac | -99..-115 | TGGCATAAAATAAAAAA | 10 |
|---|
| TnrA | glnR | Lla | -58..-74 | TGTGAGAAAATCTCACA | 20.4 |
|---|
| TnrA | glnR | Spn | -61..-77 | TGTTATAAAATGTAACA | 18.1 |
|---|
| TnrA | glnR | Sty | -61..-77 | CGTCAAAGAATCCAACA | 10.6 |
|---|
| TnrA | glnR | Syn | -66..-82 | TGTAACAAACTATATCA | 10.5 |
|---|
| TnrA | glnR | Fnu | -72..-88 | TGTCAGAAAATTAGAAA | 11.2 |
|---|
| TnrA | gltA | Bsu | -36..-52 | GGTCATAAAATCTAACA | 18.2 |
|---|
| TnrA | gltA | Syn | -160..-176 | TGTGAAGAATAGTTACA | 10.1 |
|---|
| TnrA | gltA | Nos | -45..-61 | TGTGAGAAAAATTGCTA | 10.6 |
|---|
| TnrA | gltA | Bsu | -36..-52 | GGTCATAAAATCTAACA | 18.2 |
|---|
| TnrA | gltA | Syn | -160..-176 | TGTGAAGAATAGTTACA | 10.1 |
|---|
| TnrA | gltA | Nos | -45..-61 | TGTGAGAAAAATTGCTA | 10.6 |
|---|
| TnrA | gltA | Bsu | -36..-52 | GGTCATAAAATCTAACA | 18.2 |
|---|
| TnrA | gltA | Syn | -160..-176 | TGTGAAGAATAGTTACA | 10.1 |
|---|
| TnrA | gltA | Nos | -45..-61 | TGTGAGAAAAATTGCTA | 10.6 |
|---|
| TnrA | nasA | Bsu | -83..-99 | TGTCACAAAAACTTACA | 18.8 |
|---|
| TnrA | nasA | Bha | -65..-81 | TGGGAGGATATCTTACA | 12.8 |
|---|
| TnrA | nasA | Eco | -169..-185 | TGTTACTAAATGTAACT | 11.7 |
|---|
| TnrA | nasA | EcZ | -169..-185 | TGTTACTAAATGTAACT | 11.7 |
|---|
| TnrA | nasA | Ecs | -169..-185 | TGTTACTAAATGTAACT | 11.7 |
|---|
| TnrA | nasB | Bsu | -83..-99 | TGTCACAAAAACTTACA | 18.8 |
|---|
| TnrA | nasD | Bsu | -83..-99 | TGTCACAAAAACTTACA | 18.8 |
|---|
| TnrA | nrgA | Bsu | -87..-103 | TGTCAGGAAATCTTACA | 19.6 |
|---|
| TnrA | nrgA | Bha | -98..-114 | TGTCAGATAATCAGACA | 14.6 |
|---|
| TnrA | nrgA | Lla | -70..-86 | TGTAATAAAATATAACA | 18.6 |
|---|
| TnrA | nrgA | Lin | -18..-34 | TGTTAGATAAACTAACA | 17.1 |
|---|
| TnrA | oppA | Bsu | -216..-232 | TGGAAGAAAAACTAACG | 17.4 |
|---|
| TnrA | oppA | Lla | -51..-67 | TGTCAGAAAATTTATTA | 11.4 |
|---|
| TnrA | oppA | Lin | -82..-98 | CGAGAGAAAAACTTCCA | 13.5 |
|---|
| TnrA | pel | Bsu | -28..-44 | TGGAATAAAATCTCACA | 17.7 |
|---|
| TnrA | tnrA | Bsu | -66..-82 | TGTTAGAAAATATGACA | 19.2 |
|---|
| TnrA | tnrA | Bha | -95..-111 | TGTAAGAAAATCTAACA | 22 |
|---|
| TnrA | tnrA | Cac | -99..-115 | TGGCATAAAATAAAAAA | 10 |
|---|
| TnrA | tnrA | Lla | -58..-74 | TGTGAGAAAATCTCACA | 20.4 |
|---|
| TnrA | tnrA | Spn | -61..-77 | TGTTATAAAATGTAACA | 18.1 |
|---|
| TnrA | tnrA | Sty | -61..-77 | CGTCAAAGAATCCAACA | 10.6 |
|---|
| TnrA | tnrA | Syn | -66..-82 | TGTAACAAACTATATCA | 10.5 |
|---|
| TnrA | tnrA | Fnu | -72..-88 | TGTCAGAAAATTAGAAA | 11.2 |
|---|
| TnrA | ureA | Bha | -81..-97 | TGTTAGAAAAGATTACA | 17.6 |
|---|
| TnrA | yccC | Bsu | -69..-85 | TGAGAGAAAAGCTGACT | 13.7 |
|---|
| TnrA | yccC | Sty | -80..-96 | TGGCACAAAAACAGACA | 13.6 |
|---|
| TnrA | ycsF | Bsu | -130..-146 | TGTCAGAAAACCTACCA | 19.1 |
|---|
| TnrA | ycsF | Bha | -26..-42 | TGGAAAAAGAATTGACA | 11 |
|---|
| TnrA | yodF | Bsu | -246..-262 | TGTAAGAAAAGATCACA | 18.1 |
|---|
| TnrA | ywlF | Bsu | -139..-155 | TGTCAGAAAATCTGCAA | 16.6 |
|---|
| TnrA | ywrD | Bsu | -68..-84 | CGGCAGAAAAACTGACG | 15.7 |
|---|
position : counted from translation start site.