| Factor type | MerR FAMILY |
|---|---|
| SWISS-PROT | P04833 |
| SubtiList | BG10788 |
| Consensus seq. | TGTNA-------TNACA |
| Comment | Positively regulates many genes for degrading nitrogen-containing compounds but negatively regulates glnR binds to the same sequence with GlnR (repressor) |
| Link to | Phylogenetic profile , Weight matrix & Motif alignment |
| Regulated gene |
Operon | Sigma | Regulation | Absolute position | Location | Binding seq.(cis-element) | Exp. | Reference | Year |
|---|---|---|---|---|---|---|---|---|---|
| alsT | alsT | ND | Negative | 1938073..1938089 | ND | TGTTAAAAAATCTAACA |
AR HM gel-retardation | Yoshida K, et al. | 2003 |
| gabP | gabP-P2 | SigA | Positive | 686199..686215 | -60:-44 | TGGTATATTTTCTTACA |
DB DP | Ferson AE, et al. | 1996 |
| glnQ | glnQHMP | ND | Positive | 2801106..2801122 | ND | GGGTATATTTTCTGACA |
AR HM gel-retardation | Yoshida K, et al. | 2003 |
| glnR | glnRA operon | ND | Negative | 1877073..1877089 | -58:-42 | TGTTAAGAATCCTTACA |
DB | Wray LV Jr, et al. | 1996 |
| glnR | glnRA operon | ND | Negative | 1877096..1877112 | -35:-19 | TGACACATAATATAACA |
DB | Wray LV Jr, et al. | 1996 |
| gltA | gltAB | sigA? | Negative | 2013873..2013898 | +1:+26 | AGAGTTGTTAGATTTTATGACCGGTA |
FT AR HM gel-retardation |
Belitsky BR, et al. Yoshida K, et al. |
2000 2003 |
| nasA | nitrate assimilation gene | SigA | Positive | 362395..362413 | -58:-42 | GTGTCACAAAAACTTACAC |
DP SDM AR HM gel-retardation |
Nakano MM, et al. Yoshida K, et al. |
1995 2003 |
| nasB | nitrate assimilation gene | SigA | Positive | 362395..362413 | -58:-42 | GTGTAAGTTTTTGTGACAC |
DP SDM AR HM gel-retardation |
Nakano MM, et al. Yoshida K, et al. |
1995 2003 |
| nasD | nasDEF | ND | Positive | ND | ND | ND |
Consensus | Nakano MM et al. | 1998 |
| nasD | nasDEF | ND | Positive | 357810..357826 | ND | TGTTACATTTTATAACA |
AR HM gel-retardation | Yoshida K, et al. | 2003 |
| nrgA | nrgA-nrgB | SigA | Positive | 3755710..3755726 | -57:-41 | TGTCAGGAAATCTTACA |
Other AR HM gel-retardation |
Wray LV Jr, et al. Yoshida K, et al. |
1996 2003 |
| oppA | oppABCDF | ND | Positive | 1218931..1218947 | ND | TGGAAGAAAAACTAACG |
AR HM gel-retardation | Yoshida K, et al. | 2003 |
| pel | pel | ND | Negative | 827287..827303 | ND | TGTGAGATTTTATTCCA |
AR HM gel-retardation | Yoshida K, et al. | 2003 |
| ptb | ptb-bcd-buk-lpdV-bkdA1-bkdA2-bkdB operon(bkd operon) | ND | Negative | ND | ND | ND |
beta-gal | Debarbouille M et al. | 1999 |
| pucJ | pucJKLM | ND | Positive | 3329388..3329404 | ND | TGTTACATTTTCTTACA |
AR HM gel-retardation | Yoshida K, et al. | 2003 |
| tnrA | tnrA | ND | Positive | 1397116..1397132 | ND | TGTTAGAAAATATGACA |
DE DP | Robichon D, et al. | 2000 |
| ureA | ureABC | SigA | Positive | 3768947..3768963 | +7:+23 | TGTAAACTTTTATAACA |
DP DB | Wray LV Jr, et al. | 1997 |
| ureA | ureABC | SigA | Positive | 3769052..3769068 | -99:-83 | TGTGAATAAATATAACA |
DP DB | Wray LV Jr, et al. | 1997 |
| yccC | yccC | SigA | Positive | 290380..290403 | -60:-37 | TACTGAGAGAAAAGCTGACTGATC |
PE FT | Sun D, et al. Fisher SH, et al. |
1993 2002 |
| ycsF | kipIA operon, ycsF-ycsG-ycsI-kipI-kipA-kipR-ycsK | ND | Positive | ND | -60 to -30 region | ND |
DB | Wang L, et al. | 1997 |
| ykzB | ykzB-ykoL | ND | Positive | 1397159..1397175 | -57:-41 | CGGAAGAAAAATTAACA |
PE DE DP | Robichon, D., et al. | 2000 |
| yodF | yodF | ND | Negative | 2129315..2129331 | ND | TGTGATCTTTTCTTACA |
AR HM gel-retardation | Yoshida K, et al. | 2003 |
| yttA | yttA | ND | Negative | 3107600..3107616 | ND | CGTGAAAAAATCTAACA |
AR HM gel-retardation | Yoshida K, et al. | 2003 |
| ywdI | ywdIJK | ND | Negative | 3895213..3895229 | ND | TGTCAGAAAAAATAACA |
AR HM gel-retardation | Yoshida K, et al. | 2003 |
| ywlF | ywlFG | ND | Negative | 3790809..3790825 | ND | TGTCAGAAAATCTGCAA |
AR HM gel-retardation | Yoshida K, et al. | 2003 |
| ywrD | ywrD | ND | Positive | 3719805..3719821 | ND | CGTCAGTTTTTCTGCCG |
AR HM gel-retardation | Yoshida K, et al. | 2003 |
| yxkC | yxkC | ND | Negative | 3988220..3988236 | ND | TCGTACATTTTATTACA |
AR HM gel-retardation | Yoshida K, et al. | 2003 |
| yycC | yycCB | ND | Negative | 4158535..4158551 | ND | TGTGACATCTTCTTACA |
AR HM gel-retardation | Yoshida K, et al. | 2003 |