| Factor type | Unique(CTF) |
|---|---|
| SWISS-PROT | P40396 |
| SubtiList | BG11059 |
| Consensus seq. | AAAANNNNNTTTT |
| Comment | Positive autoregulatory gene occupying a central position in the competence-signal-transduction network CTF means competence transcription factor |
| Link to | Phylogenetic profile , Weight matrix & Motif alignment |
| Regulated gene |
Operon | Sigma | Regulation | Absolute position | Location | Binding seq.(cis-element) | Exp. | Reference | Year |
|---|---|---|---|---|---|---|---|---|---|
| addB | addB-addA | SigA | Positive | 1135507..1135556 | -90:-41 | TGCGGAGATAATCAGCTTTTTATATGTGAAAAGGCCGTTTTT ACCAATAG |
FT | Hamoen LW, et al. | 1998 |
| comC | ND | SigA | Positive | 2864462..2864520 | -94:-36 | AGAATCAAAAAAAGATTCTGCCGTTTTTTTCATGTGTAAAATTG AATATTCCCAATTGG |
FT | Hamoen LW, et al. | 1998 |
| comEA | comEA | SigA | Positive? | 2641288..2641340 | -82:-32 | aaACCATCGTTTCCTAAAACGATGGTTTTTTAAAATGCTTTTT TATGCTTTTG |
FT | Hamoen LW, et al. | 1998 |
| comFA | comFA-comFB-comFC | SigA | Positive? | 3642638..3642697 | -92:-33 | ATAAGGCCAAATCTCCGTTTTTAGAGCGGAGATTTTTTTATATT CTTATTTTAATAGTTG |
FT | Hamoen LW, et al. | 1998 |
| comGA | comGA | SigA | Positive | 2559361..2559433 | -104:-32 | TCTTTTTTCTTGCCAGAAAGAATTGGTTTTTCAGCATATAACATCT CACAAAATCACGTTTTCCCTGTTTGAT |
FT AR, HM |
Hamoen LW, et al. Berka, R. M., et al. |
1998 2002 |
| comK | ND | SigA | Positive | 1116259..1116322 | -118:-55 | TGAAAGTAAAATCGGTTTATTACTAGTCATTTAGTACCATTAAATA TCATTAAAAGATGATTTT |
FT AR, HM |
Hamoen LW, et al. Berka, R. M., et al. |
1998 2002 |
| cspB | ND | ND | ND | 983511..983544 | +411:+378 | AAAAAGCTGTTTTGCTTATGCAAAACAGCTTTTT |
GS | Hamoen LW, et al. | 1998 |
| degR | ND | SigD | Negative | ND | -352:-52 | ND |
DB DP | Ogura M, et al. | 1997 |
| nucA | ND | ND | Positive | ND | No Data; SspI-PstI2 fragment | ND |
GS | van Sinderen D, et al. | 1995 |
| rapH | ND | ND | Positive | 750187..750220 | ND | AAAAAACAAATTGACAGGATGAAAAAACAATTTC |
AR, beta-gal, HM | Ogura, M., et al. | 2002 |
| recA | ND | SigA | Positive | 1763732..1763852 | -150:-35 | AGAGCAAAAATAATATTTTCAGCACATTATCCTCCTAAGAAAAC ATGATTTCTCTGATACATTATGATATTTTGATAGGAATCACGCC AAGAAAAAATCCGAATATGCGTTCGCTTTTTTC |
FT, hydroxyl radical protection analyses DB DP GS FT |
Hamoen, L. W., et al. Haijema BJ, et al. |
2001 1996 |
| rok | ND | ND | Negative | ND | ND | ND |
gel shift | Hoa, T. T., et al. | 2002 |
| sbcD | ND | ND | Positive | ND | ND | ND |
AR, beta-gal | Ogura, M., et al. | 2002 |
| smf | ND | ND | Positive | 1681787..1681820 | ND | AAGAACTTGTTCGAAACTTGTAAAACGCATTAAT |
AR, beta-gal, HM | Ogura, M., et al. | 2002 |
| thdF | ND | ND | Positive | 4211950..4211993 | ND | CAAACTATGTTATCTTTTAGTTTTGGCATAATAAAAATTTTTT T |
AR, beta-gal, HM | Ogura, M., et al. | 2002 |
| ybdK | ND | ND | Positive | 221708..221764 | ND | AAAATTTTCTTTTATTTATATGAAAATAGAGACAGTATCCTGACA AAGGAACATTTC |
AR, beta-gal, HM | Ogura, M., et al. | 2002 |
| yhcH | ND | ND | Positive | ND | ND | ND |
AR, beta-gal | Ogura, M., et al. | 2002 |
| yhjB | ND | ND | Positive | 1120206..1120262 | ND | AAAATAAATTTATTTATAATTCGAACCACAGCCTTTCACTCCAAA AAATGACATGTG |
AR, beta-gal, HM | Ogura, M., et al. | 2002 |
| yneA | ND | ND | Positive | ND | ND | ND |
AR, beta-gal | Ogura, M., et al. | 2002 |
| yneB | ND | ND | Positive | 1917796..1917849 | ND | TAAACAAAAATGATTTTATTGAATGGGTAGCTGATAAAAATCAA CTTCAAACCT |
AR, beta-gal, HM | Ogura, M., et al. | 2002 |
| ysxA | ND | ND | Positive | 2861964..2862007 | ND | AAGACAGAAGTTGCGTTTTGGTCCCTCAGTGAAGAAGAGATTT G |
AR, beta-gal, HM | Ogura, M., et al. | 2002 |
| yvrP | ND | ND | Positive | 3414403..3414459 | ND | ATATGACTTGATTAAAAATGAAAAAGAGCTAGTTACTGTATGAAA AAATCCCGGTTT |
AR, beta-gal, HM | Ogura, M., et al. | 2002 |
| yvyF | yvyF-flgM-yvyG-flgK | ND | Positive | ND | ND | ND |
Disruption AR, beta-gal |
Liu J et al. Ogura, M., et al. |
1998 2002 |
| ywpH | ywpH | ND | Positive | 3739694..3739737 | ND | AAAAGTACATATTTCTTCAAAGGAAAAAAGCAAAAGATGTTTT T |
AR, beta-gal, HM | Ogura, M., et al. | 2002 |
| yyaF | yyaF-rpsF-ssb | ND | Positive | 4200061..4200094 | ND | ATCAAAGGGATTGGCAAGCTGAAAATGCTTTTTT |
AR, beta-gal, HM | Ogura, M., et al. | 2002 |