| Factor type | |
|---|---|
| SWISS-PROT | P06574 |
| SubtiList | BG10735 |
| Consensus seq. | AGGTTT(-35)-N17-GGGTAT(-10) |
| Comment | RNA Polymerase Sigma-37 Factor (Sigma-B) general stress factor sigma |
| Link to | Phylogenetic profile , Weight matrix & Motif alignment |
| Regulated gene |
Operon | Absolute position | Location | Binding seq.(cis-element) | Exp. | Reference | Year |
|---|---|---|---|---|---|---|---|
| aldY | ND | 3985381..3985421 | ND | ATTCGTTTACATATTGGCTTCAG--CGGAAATAGAAGAAGACA |
HB | Petersohn, A., et al. | 1999 |
| bmrU | bmrU | 2492786..2492829 | -40:-1 | TCTTCGTTTACTGCTTACAGAAAAAGGGGATTATATAACCAGAA |
beta-gal, PE | Petersohn, A., et al. Petersohn, A., et al. |
1999 1999 |
| cdd | 2610606..2610659 | ND | TTTTTAGAAATGGGCGTGAAAAAAAGCGCGCGATTATGTAAAATAT AAAGTGAT |
S1 | Wang LF, et al. | 1984 | |
| clpP | clpP | 3545181..3545250 | AGGCCAGCTTTTTGTTTGACCTTTATTGACCAAAAATGTATCATGT AACTACATACTTACCTAAAAGGTG |
PE,HB | Gerth U., et al. | 1998 | |
| csbA | ND | 3614457..3614499 | -40:+3 | ATGGTGATTGATTTTGGCTGAAAAGGGGTATGGTGTAAGTAGA |
ND | Boylan SA, et al. Hecker M, et al. |
1991 1996 |
| csbB | csbB | 930046..930091 | ND | AAAAAACAGGTTTAAACGACTTTAAAAAAAGGAATAGCCTTACTGA |
beta-gal | Akbar S.,et al. | 1996 |
| csbC | csbC | 4086914..4086968 | ND | TTTTCAAAACAAATGTTTCAAATGAGATAGGAAATGGGTACTAATC TATTAACTT |
beta-gal | Akbar S.,et al. | 1999 |
| csbD | csbD | 3769337..3769390 | ND | TAACATTAGAATGTTTATTGCCTCTCAGATCGGGAAGTTAACAAGT ACACACAT |
beta-gal | Akbar S.,et al. | 1999 |
| csbX | csbX-bofC | 2838024..2838071 | -43:+5 | CTAACAGGATTACAATTCAGCAAGCTTGGGTACATACTCCATTG ATAC |
PE | Gomez M., et al. | 1997 |
| ctc | ND | 58706..58747 | ND | CGAGGTTTAAATCCTTATCGTTAT-GGGTATTGTTTGTAATAG |
beta-gal,Northern hybridization HB |
Ollington JF,et al. Igo MM, et al. Hecker M, et al. Petersohn, A., et al. |
1981 1986 1996 1999 |
| ctsR | ctsR-yacH-yacI-clpC-radA-yacK | 101311..101362 | ND | ATCAGCAATCAGGTTTTGTGGACCGGGAAAATGGAAATAATGAAGG ATAGAG |
Northern blat, PE | Kruger E, et al. | 1996 |
| dps | ND | 3135740..3135783 | ND | AAGAGGTTTTAGCGTACGATATTAAGGGTATACATAGTCATATA |
PE | Maul B, et al. Antelmann H, et al. |
1995 1997 |
| gsiB | ND | 493996..494037 | ND | TGTTTGTTTAAAAGAATTGTGAGC GGGAATACAACAACCAAC |
ND | Hecker M, et al. | 1996 |
| gspA | ND | 3944465..3944503 | ND | ACGTGTTTATTTTTTTGAAAAA---GGGTATGTAACTTG-TAC |
HB | Antelmann H., et al. Hecker M, et al. Petersohn, A., et al. |
1995 1996 1999 |
| gtaB | gtaB | 3664574..3664616 | ND | AAAATGTGTAAAAACATATTGAAAAGGGTAAATAGAGAATAGT |
PE | Varon D, et al. Hecker M, et al. |
1993 1996 |
| katE | ND | 4009250..4009293 | ND | TAGCAGTTTATATGAAGAACGCCACGGGTAAATGTGCTGTAGAA |
ND | Hecker M, et al. | 1996 |
| katX | katX | 3963946..3963999 | -48:+6 | AAAAAAACGGCTGTTTTAAAATCTTTCCATTCAGGGAATATTGTTA CCGTTCAA |
PE, 2D-PAGE | Engelmann S., et al. Petersohn, A., et al. |
1995 1999 |
| nadE | nadE | 337773..337823 | -42:+9 | ACAGTCATGATTCATTTTCATTGATTTAGGGAAATGATCAGTAA TAAGGGA |
Northern blat, PE | Antelmann H. et al. | 1997 |
| opuE | ND | 727789..727821 | ND | CAATGTTTCATCGCTTGAATGGCCGGGAATACT |
PE | von Blohn C, et al. | 1997 |
| relA | ND | 2822029..2822072 | ND | TTTGCATTTATTTTATATAATATTTGGCTATTTGAACTTCTGCT |
ND | Wendrich TM, et al. | 1997 |
| rsbV | rsbV-rsbW-sigB-rsbX | 521577..521619 | ND | GAAAGGTTTAACGTCTGTCAGACGAGGGTATAAAGCAACTAGT |
ND | Kalman S, et al. Hecker M, et al. |
1990 1996 |
| spoVG | ND | 55790..55833 | ND | CGAGCAGGATTTCAGAAAAAATCGTGGAATTGATACACTAATGC |
Wong SL, et al. | 1984 | |
| trxA | trxA | 2912648..2912689 | -40:+2 | TCAGGTTTTAAAACAGCTCCGGCA-GGGCATGGTAAAGTACAT |
HB | Scharf C, et al. Hecker M, et al. Petersohn, A., et al. |
1998 1996 1999 |
| yacL | ND | 108556..108597 | ND | TTTCGGTTAAAACCTTATGAATAC-GGGTATATTAATGTTGGT |
HB, PE | Petersohn, A., et al. | 1999 |
| ycnH | ND | 442324..442364 | ND | AACGGATTACTTTTGCTGACAGC--GGGAATTAACGGTAATAT |
HB, PE | Petersohn, A., et al. | 1999 |
| ydaD | ydaDE | 471197..471241 | -40:+1 | AGCCATGTTTATCCAAAGAGTGTGTGAGGTACACAACAAATAGA C |
PE,Northan blot,beta-gal | Petersohn, A., et al. Petersohn, A., et al. |
1999 1999 |
| ydaG | ydaG | 473296..473335 | -36:+4 | TTGTTTAAATCTTCCCCGGATGTGGAAAAGTAACAGCGGA |
PE,Northern blat, 2D-gel | Petersohn, A., et al. | 1999 |
| ydaP | ydaP | 488329..488371 | -40:+1 | TCCGGGTTTTAAAGCCTTTCTCCTGTGGTATTGAAAAAAGGAA |
PE,Northan blot,beta-gal | Petersohn, A., et al. Petersohn, A., et al. |
1999 1999 |
| ydaS | ND | 492488..492529 | ND | AAGTGTTTCGAAATGATCAGGAGC-GGTTATTGATTGGTAAAT |
HB | Petersohn, A., et al. | 1999 |
| ydaT | ND | 493016..493056 | ND | ATGCGTTTTTATTTTTCACCTGC--GGGTACCATTTTTATAAA |
HB | Petersohn, A., et al. | 1999 |
| ydbD | 496137..496182 | -41:+5 | GTTTTTCGTTTATCTTTCTATCGATCGGAAATATAAAAAGAGAT AA |
RACE-PCR | Price CW, et al. | 2001 | |
| ydbP | ND | 507828..507872 | ND | CTTTGATTACAGCCAGAGCTGTCTGCAGGGAAACATTATGTTCTG |
HB | Petersohn, A., et al. | 1999 |
| ydfO | 596359..596408 | -45:+5 | AAGACACCGTTTCGTTTTATGAAAACAGGGGAGAACAATTTAAGA GAGAT |
RACE-PCR | Price CW, et al. | 2001 | |
| ydhK | ND | 623921..623962 | ND | TTATGTTTGGCTTTGCAAACAAAG-GGGAATAGGACAAACTGC |
HB | Petersohn, A., et al. | 1999 |
| yfhK | ND | 928069..928111 | ND | ACATGTTTCACCAGCCTGTCAATCAGGGAATACCACTTATATC |
HB | Antelmann, H., et al. | 2000 |
| yfkJ | 861284..861336 | -44:+9 | TTCATGAAGGTTTCTTTTTAGAGAAATAGGGGCAAAGAATAGGGA GGTTGCAC |
RACE-PCR | Price CW, et al. | 2001 | |
| yflA | ND | 844047..844088 | ND | AAAGGTTTATGTTTTTCCATCTAT-GGGAAATGATTCATAAAC |
HB, PE | Petersohn, A., et al. | 1999 |
| yhdF | ND | 1021473..1021514 | ND | TGGCGTTTATTCATTTCTGTCGTG-TGGTAACGTTCAGTATCA |
HB, PE | Petersohn, A., et al. | 1999 |
| yhdN | 1029515..1029554 | ND | AAGGTTTAACATTTTTTCCAGAGGGGAAAAGATAGTGAAA |
Northern blat, 2D-gel, HB | Petersohn, A., et al. | 1999 | |
| yheK | ND | ND | ND |
beta-gal | Pragai Z, et al. | 2002 | |
| yjbC | yjbCD | 1226177..1226219 | -1:-43 | TAAGGCTGTTTAAACAAGAAGAAATGGGGTATATCTAAAAGTA |
HB, PE Northern blat, PE |
Petersohn, A., et al. Antelmann, H., et al. |
1999 2000 |
| yjgB | ND | 1284775..1284815 | ND | ACATGTTTCGTTGCAAAAACACG--GGGAAACGGAATGGTAGA |
HB | Petersohn, A., et al. | 1999 |
| ykgA | ND | 1371206..1371248 | ND | AATGGTTTAATGATTTTCATGATGAGGGAATAATAAATGTATT |
HB | Petersohn, A., et al. | 1999 |
| ykzA | ykzA | 1381249..1381304 | -51:+5 | CTCGGCAAACATAGCATGTTTAAAAAGATCAGAAAGGGAAATATAACAAC TAGATA |
PE,HM | Volker U, et al. | 1998 |
| yocK | yocK | 2586226..2586266 | ND | GCCGTTTGAAATTGTGAAATCAGGGAAATCTTTGTTTAAAA |
Northern blat, 2D-gel, HB | Petersohn, A., et al. | 1999 |
| yotK | ND | 2152613..2152655 | ND | TCTAGTTTCTCTTTTTAAAAGAGTAGGGTATTGCAAACAACAG |
HB | Petersohn, A., et al. | 1999 |
| yoxA | ND | 2000100..2000140 | ND | AACGGTGTTTTTTTATTTGATAG--GGGAAAATATAAAATGGA |
HB | Petersohn, A., et al. | 1999 |
| yoxC | ND | 2018577..2018617 | ND | TTCTGATTAAAAAAACGGATACA--GGGTAATGACATAAGAAA |
HB | Petersohn, A., et al. | 1999 |
| ypuB | ND | 2433561..2433602 | ND | TGCTGATTATACAAAAAGTGGATT-GGGAATGATAAAAGAACA |
HB | Petersohn, A., et al. | 1999 |
| yqgZ | 2563660..2563715 | -47:+9 | CTGTAAATGGTTTAAATGAAAAATGATCCGGGTAGTTATTCTACAA AGAGATGGTT |
RACE-PCR | Price CW, et al. | 2001 | |
| yqhA | ND | 2563172..2563216 | ND | TTCGGTTTTTCACCTGTCCAGAAACTGGGCTAGCTGGATTCGAAC |
HB | Petersohn, A., et al. | 1999 |
| yqhQ | ND | 2540123..2540164 | ND | CTGCGAGTAAAATTTGAAAATAAC-GGGTATAATGCATGTAGG |
HB | Petersohn, A., et al. | 1999 |
| yqxD | yqxD-dnaG-sigA | 2603292..2603340 | -41:+8 | ATCCTGGGTTTTTGGCTGTGCCAAAAGGGAATAATGAAAAACAA TAGCA |
PE | Liao CT, et al. | 1999 |
| yqxL | ND | 2560701..2560741 | ND | ACTGGTTTAGTGACGCGGTTATT--GGGCAATTAAAGAATAAA |
HB | Petersohn, A., et al. | 1999 |
| yrvD | ND | 2825417..2825458 | ND | CCATGTTTAAAACCAGTCTTGATT-GGGAAAGTTACCTCAATA |
HB | Petersohn, A., et al. | 1999 |
| ysnF | ND | ND | ND |
beta-gal | Pragai Z, et al. | 2002 | |
| ytkL | ND | 3009662..3009703 | ND | ATAAGTTTTTCAGCTTTTTAAAAA-GGGAAAATAAAAAAAACA |
HB | Petersohn, A., et al. | 1999 |
| ytxG | ytxGHJ | 3047096..3047127 | ND | ACATGTTTATGATTGAAGAAAACGGGTAAACA |
PE | Varon D, et al. | 1996 |
| yvgO | ND | ND | ND |
beta-gal | Pragai Z, et al. | 2002 | |
| yvrE | ND | 3405593..3405633 | ND | AGTGGTTTGGACACCTCTTTGCC--GGGAATAACAATATATAG |
HB | Petersohn, A., et al. | 1999 |
| yvyD | ND | 3630632..3630680 | -42:+7 | GATTTATGTTTCAGCAGGAATTGTAAAGGGTAAAAGAGAAATAG ATACA |
PE PE |
Drzewiecki K et al. Eymann C, et al. |
1998 2001 |
| ywjC | 3817855..3817906 | -44:+8 | AAAAATAGGTTTACGACTTGTCAGCTTTGGGAACTTAGGCTATAT AAGACAA |
RACE-PCR | Price CW, et al. | 2001 | |
| ywmE | 3773591..3773644 | -48:+6 | TTTTTTATTGGTTTAAAAACAGTTTGGGCGGGAATGATACCCTAAA AAGGGGTT |
RACE-PCR | Price CW, et al. | 2001 | |
| ywtG | 3692978..3693030 | -49:4 | TAAAAAGGTTTAATGGCCGGAAAAAGAGGCTAAAAGATTTCTAAAA AAATCCC |
RACE-PCR | Price CW, et al. | 2001 | |
| yxkO | ND | 3972317..3972358 | ND | TTTTGTTTGAAAAAGAAAAGGGAC-AGGAAAAATAGGAAAAGA |
HB | Petersohn, A., et al. | 1999 |
| yycD | ND | 4157968..4158009 | ND | GATCGTTTCGGACAGTAACAAGGC-GGGAAAAATGCAATAAAA |
HB | Petersohn, A., et al. | 1999 |