| bglS_compl | -------CCCCTTTCAT-----TGAAAGCGTTTTC-----TATGTTGATCT-------------- |
| hutP_2_compl | -------CCGCTCTTTT-----TGGAAGCGGTTTC-----AATTGCGGCTA-------------- |
| yjmA | ---AATGCTCGACCAAA-----TGAAAGCGTTATC-----AAATGTTGGCCTTTTC--------- |
| glpF_compl | -----TGTATCAGTGCA-----TGAAAGCGGTGTC-----AATCACTTTCCGTC----------- |
| mmgA | -------AACTAGAAAT-----TGTAAGCGCTGTC-----TATCTTCTGAA-------------- |
| ackA_2 | -------CACCTCCCTT-----TGTAAGCGTTATC-----ATATTTTTGGA-------------- |
| ackA_2 | -------GACTTCTTAT-----TGTAAGCGTTATC-----AATACGCAAGT-------------- |
| ydhO | ---CCGCTTGTCGGACT-----TGGAAGCGGTATC-----ATTCCAACACTGATTG--------- |
| yxjC | ---TGCGGACAGGTTTT-----TGTAAACGCTTTC-----TAGTTCGCGGAAACGG--------- |
| msmX_compl | --ATCCCCCTTTGTTAT-----TGTAAACGCTTTC-----TTATATTGAGTGTAA---------- |
| acoR | --CTGCTTTTTTATTGT-----TGAAAGCGCTTTA-----TTTTTCCCCTACAATAGA------- |
| ydbH | ---TTCCCCAGACTGTA-----TGAAAACGCTATC-----ATTCTAGTAAGAAAGA--------- |
| licB | -------TGAGTGTTTA-----TGAAAGCGATTTC-----ATAATATGATG-------------- |
| gntR_2 | -------CAGGTCTGAT-----TGAAAGCGGTACC-----ATTTTATCAGA-------------- |
| gntR_1 | ---GTTTCAGGTCTGAT-----TGAAAGCGGTACC-----ATTTTATCAGAAAATA--------- |
| treP_compl | --TGGAATAAAAATATC-----TGCAAGCGTTTTC-----ACAGCACGCTGCAAA---------- |
| bglP | -------ACACCAAAAA-----TGAAAGCGTTGAC-----ATCTCACGAAT-------------- |
| amyE | ---GTGATAATTTTAAA-----TGTAAGCGTTAAC-----AAAATTCTCCAGTCTTC-------- |
| yobO | ---TATAAAAACGTTAA-----TGTAAGCGGATTC-----ACAGCGATTGGTGATC--------- |
| citM | ---AAGGGAGAAAAAAA-----TGTAAGCGGATTC-----ATTTAAGGGGGAATGG--------- |
| araA | -------GATTCTTTCT-----TGAAAGCGTTTTA-----TATTAAAAGGA-------------- |
| araA | -------AATTATTTTT-----TGAAAGCGTTTTA-----TTCTTTATTCC-------------- |
| acsA | -------GGCATGAACT-----TGAAAGCGTTACC-----AGCAATAGAGG-------------- |
| pta_1 | AAAATAAGATTTTTTTA-----TGAAAGCGCTATA-----ATGAAAGTTGGCTGTTTGAA----- |
| lcfA | ---GAAGGCAATAAAAA-----TGAAAACGTTATC-----AATAGTCGACCAGATT--------- |
| kdgA | ---TCCGAGCGAAATTA-----TGGAAGCGCTGAC-----ATTCGGTTTTACGACA--------- |
| rbsR | -------TGGTTAAAAA-----TGTAAACGGTTAC-----AAATCCAGAGG-------------- |
| malA | -ATGGTATAAATGGAAT-----TGTAAACGTTATC-----AAGGAGGTCGTCATATGA------- |
| iolB | ---ATGACTGTGGGAAA-----TGAAAACGTTGTC-----ATCGTTCCTGCGGGAT--------- |
| ccpC_compl | -----TCGTTTAAATTA-----TGTATGCGCTTTC-----TTTTTTCACTCTGCCTA-------- |
| dra_compl | --AATGTCCGCTTTTTG-----TGTATGCGGTTTC-----AAAGCTGTATGATCA---------- |
| mmsA | ---TTTTTTGGTGTTTT-----TGAAAGCGTTTAA-----TTCTTGGCTTGCTGAAAAGT----- |
| araE | -------AAGGTTTAAA-----TGAAAACGCTTTA-----CTCAACATTCG-------------- |
| acuA | --TAAACCATGTTGAAAACGCTTTA-----TAATTTGGTAT------------------------ |
| acoA | --AAACAGACTAAAAA-----TGTAAGCGTTTGC-----TTTTTCGGGGACGGGG---------- |
| galT | --CGAAACCGGCCGAA-----TGGAAGCGGATAC-----AGATACGTACCGTGAC---------- |
| xylA | --TCAACTATTTTGGAAGCGCAAAC-----AAAGTGGTTTA------------------------ |
| levD | --GAAATAACAATGAAAACGCTTAA-----CACAACTGTGTT----------------------- |
| araB | --ATTAAATCCTTCAA-----TGAAAACGATTAC-----AAAGGACAAATTGTCA---------- |
| citZ | --CAGCCAGTAAAA-----TGTAAGCATTTTC-----TTTTTGGGGGAGA--------------- |
| yxkJ | --AACACACATGCAAT-----TGCAAACGGATAC-----AATTCACGAAGGGGTT---------- |
| ackA_1 | --AACCGCAAATTGTAAGCGTTCAT-----CAATACAAAACC----------------------- |
| pta_2 | --AAGAAGAGTATGCTAGTAAA-----AGAAAGCGTTTTT-----GTAACTTTTTGAGGAGGTTT |
| hutP_1_compl | --CTAAAAATTCTGATAACTATTAA-----CTGAGTATTAT------------------------ |
| xynC | --CAAGTTAGTTTGTTTGATCAACAAACTAATGAA------------------------------ |
| xynC | --AGAGAATGTATGTTTGATCAACAGGACTTTGGA------------------------------ |
Link to : Weight matrix