| abnA | -----------------CTATTTTTTTGTC----------TGTACA----------AATTACAGCATAGTGAC----------TACAAT----------AAAGGGGATACCG----------- |
| abrB-P2 | AATTCTTACAATCAATAGTAAACAAAATGA----------TTGACG----------ATTATTGGAAACCTTGT----------TATGCT----------ATGAAGGTAAGGATTTTGTCGAAT |
| acsA | GCGTTTTCAACATGGTTTATATTTTAAAAA----------TTGAGA----------AGAATATGAATATATAC----------TATAAT----------AATTGTGACAACTTCAGCAAAGGG |
| acuA | TTCTTCTCAATTTTTAAAATATAAACCATG----------TTGAAA----------ACGCTTTATAATTTGG-----------TATTCT----------TAAAGAAGGCATGTATTTTTGATA |
| adaA | TTGTTATCTTGCTATTACATTCTAACCACC----------TTATTT----------TTTTCTATTTATGAGGT----------TATAGT----------GTAGTTATCAAGAATGCTAAACGG |
| addB | GAAAAGGCCGTTTTTACCAATAGATCAGAT----------TGGTCA----------TTTTCGTCAACATTCGA----------TAAAAT----------ATAGAGAGATAAAAAGAGAGGGGT |
| ahpC | ------------------------TATGGC----------TTGACA----------AAAAATATATATTAATT----------AATAAT----------TCATATATAATT------------ |
| ald | TCCATGTTTTTTTATTTTCTTAATCAAACA----------AAGAAT----------TTTCCAAAATATCAAGC----------TACACT----------AAAAATATCACATATACAGGAGGA |
| alkA | GTGGTTAGAATGTAATAGCAAGATAACAAA----------ATGAGT----------AAAGATGATTATGTGA-----------TAAACT----------AATTTCAACCAGCGTGAGTTTTCT |
| alsS | TTACATATTAATCATAAGGCGAATCGATAT----------TGGAGG----------TCAATTTCCAAAGAGTGT---------ATAGTG----------AAACTTATCACAAGATATTTAAA- |
| amhX | ----------------------TTAATTAT----------TCTGAA----------TAGTAGCAATATGTGC-----------TATATT----------ATATACAGCCTATCTTCCTGTTT- |
| amyLY | GGAACATTGATTTGTATTCACTCTGCCAAG----------TTGTTT----------TGATAGAGTGATTGTGA----------TAATTT----------TAAATGTAAGCGTTAACAAAATTC |
| ansA | GGAAGTGTACGCGAATTGAATAATAATGTC----------TTGCGT----------ATTTTATTTTCCGTGTC----------TATAAT----------TGCATTAAAAGTATGCGAAAAGCG |
| aprE | ATAGAGATAAAATCATCTCAAAAAAATGGG----------TCTACT----------AAAATATTATTCCATCTAT--------TACAAT----------AAATTCACAGAATAGTCTTTTAAG |
| araA | -------------------------AAAGA----------TTGACA----------GTATAATAGTCAATTAC----------TATAAT----------AAAATTGTTCGT------------ |
| araE | --------------------------AACA----------TTGACA----------GAAAATGCAAACAAGAT----------TATTCT----------ATATTTGTACG------------- |
| araR | --------------------------AATG----------TTTTCT----------TACAAAGAACGCTGTGA----------TATACT----------GAAATTTGTCCGT----------- |
| argC | TATAAATGAATAAAAATATTAAATATACGA----------TTGAAT----------TAATTTTTATTCATGT-----------TATAAT----------GTTAAATAATTTCACAAAGACCAA |
| arsR | ---------------------------TGC----------TTGCAT----------TATTTTAAAAATCATGAG---------TATAAT----------AAATACATCAA------------- |
| asd | AGAAAATCTTTCCCAAACTAAAAAATTCGG----------TCATCA----------CCCGCATATTCTATGG-----------TAAAAT----------AAAACGTAAAATCATAGTCAAATC |
| gluB | AAACCTCCCCAAAACAAGAAATTAGGTTGA----------TAGACA----------ATCATGAGAAAGATTTT----------TACAAT----------GAGTTCGTGCTCATAAGAAGTGTA |
| bglP | -------------------------AAGCG----------TTGACA----------TCTCACGAATCTAGTGC----------TAAAGT----------ATACCTACAAACA----------- |
| bsrB | ----------------------CTGACCTC----------TTGATT----------AAAAGCGCCTGATGGTG----------TACTAT----------ATTAAAGAAGCT------------ |
| ccdA | --------------------------TCAA----------ATGAGA----------AGGAGTATAATGTCTCAATG-------TCAAAT----------TAAATTATATAAG----------- |
| ccpC-P2 | --------------------------GGGC----------TTGAAT----------AAGAAACTAAGATTTTAT---------TAGAAT----------GGGAGATAAGAAAAACTTATTGAT |
| cdd | TACATTTATTTTACATTTTTAGAAATGGGC----------GTGAAA----------AAAAGCGCGCGATTATG----------TAAAAT----------ATAAAGTGATAGCGGTACCATTAT |
| cggR | ----------------------CTTAACAG----------TTGAAT----------AAACAATTCCACCCTGT----------TAAAAT----------AATTAAAGAAAGCAGAAAT----- |
| citA | TAATATTTTTAATTAATTCCCTTTAAAATA----------TTGATT----------ATTTTTTAAATATTATA----------TTTACT----------ATAATAACAGAAAAGGATAGGGGG |
| citB | AACTTATTGTATTTAATAAAAACATTGATA----------TTTACT----------TATGTATGATTTTGTTT----------TAATAT----------GAAATTGTGAGAAAATTGTGATGG |
| icd | GGCTTGCGTCAATGAGGTTAGCCTCTTGTT----------CAGACA----------TCAAAATTGGGTTACAC----------TTTAAA----------TTGAATGTTAGGAAAAATCATTTT |
| citR | ATGTACCATTTGTATTCCCCCTATCCTTTT----------CTGTTA----------TTATAGTAAATATAATA----------TTTAAA----------AAATAATCAATATTTTAAAGGGAA |
| citZ | GAATGGAAAAAAAAAATTATAGGTAAACAT----------TTAACA----------AATGTCTGATTATTGTT----------TATAAT----------GAGAATAGGCTTAAACTTAAATAA |
| clpE-s1 | --------------------------AGAC----------TTGAAA----------GTCAAAGATAGTCAGAG----------TATACT----------ATTAATCAAAG------------- |
| clpE-s2 | --------------------------TGGT----------TTGAAT----------GCCGTTAAGTTTGCCG-----------TATACT----------AATAGTCAAAG------------- |
| clpP-S1 | ---------------ATCTGACATACGATG----------GTTTGA----------ACCCCTGTATTTTTG------------GGGAAA----------ATGGGAAAAAGAGACGACTTTGCA |
| clpX | ------------------------AACACA----------TTGTTA----------CCGTCTTTTTGGAAAGTATGG------TAAAAT----------GCAATACATAC------------- |
| codV | -----------------------GTATTGA----------TTGCAA----------CCTGAGCGCGATTTGTGA---------TACCAT----------TTAAAAGCCCTT------------ |
| comA | GAATTGTAATGGATTTATAACGGAAACGAC----------TTGGCA----------CAGGCCAAGTCTTTTT-----------TATAAA----------ATGGAAAAGAGTGAGTAAAAGGGA |
| comC | TTTTTCATGTGTAAAATTGAATATTCCCAA----------TTGGAG----------CTCAGGATGTCCATTTTGC--------TACAAT----------CCATACCAGAACTCAATGAGTAAA |
| comE | GATGGTTTTTTAAAATGCTTTTTTATGCTT----------TTGCAG----------TACAGACGAACGTATGA----------CATACT----------CGTCTACACATGAAACTGCTTTTT |
| comF-P1 | GAGATTTTTTTATATTCTTATTTTAATAGT----------TGGACA----------GAAAATATTCATTCAGG----------CATACT----------GTTTCGAAAGGAGGCGTGCTATGT |
| comG | TAACATCTCACAAAATCACGTTTTCCCTGT----------TTGATT----------ACCTTTTCTTCTTTTTC----------TACAAT----------ATGCGTTGAAAGGAGAGGGAATCA |
| comK | AGATGATTTTATCTTAAATGTTAAAAAAAC----------CTGTCG----------TTTTACAAAAACAGATGA---------TAGATT----------ATTAGTATAAATTTTGCAGAAAAA |
| comQ | TTATATGATTGTTAAAAAACGAAAAACCTG----------CTGTCC----------TTTAAATGTCCCATTTAG---------TAAAAT----------GGAATGGGAGGGGGGAAGTCGTT- |
| cspB | GTATTTTCCGAAAAAAATTTCAATAAGCAG----------TTGTTT----------TTTCTGAAGATTACTGG----------TAGAGT----------AAAGGTAATTATTTTTGTTCGAAC |
| ctaA | AAGGCTCTGGGAATTGCCACAAAACACATA----------TTCGCT----------TACACTTGGAACGTATA----------TAAAAT----------TGCAGCAGTATGTTAAGAAGGTGA |
| clpC | ----------------------CGAGAAAG----------TTGAAA----------ATTCTCGAGAAACGGCT----------TATAGT----------AAGATTAAAGTCAAA--------- |
| cysH | -----------------------AGTCGGG----------TTGACT----------TATGTTAGAATTGTGC-----------TAAAAT----------TTACTACAAATCTAAAAACT---- |
| yvgR | -------------------------TATAT----------TTTACT----------TAAGCCTAGTATTCCGG----------TAAAGT----------TCAATTAGATG------------- |
| cysK | ------------------------AAGTGA----------TTGACA----------AAAAATTTTGAAATTGA----------TAGATT----------ATATACATAATACC---------- |
| ywfK | -------------------------CCTTC----------TTTACC----------AAGACGGATGATATGAG----------TACAAT----------AAAGAAAAC--------------- |
| degQ | GTCACGCAGGACTTTTTTGCATACTTTTCG----------GTGAAA----------AATGAGCCGAAAGCAGA----------CACACT----------ATTAGTAACAGATCAAATACCTAG |
| degSU | AAGACTGCCTATACAAATTCGTACAGTCTT----------TAGAAT----------TTTTGTGCGTATTTTGG----------TATCAT----------AAAGAGTAGATAGTATATAAAAAT |
| dhbA | --------------------------ATAT----------TTGACT----------GTCACATGACATTTGGA----------TATGAT----------TATTTTT----------------- |
| divIB | AATCATCGGCGGAAATCGCTGATTCAAGTT----------CTGACT----------GAAGCTGTTCATATGA-----------CATACT----------GTAAGCAAACGAACAAACGGCATC |
| dnaA-TR3 | TCCGCTTTGTGGATAAGATTGTGACAACCA----------TTGCAA----------GCTCTCGTTTATTTTGG----------TATTAT----------ATTTGTGTTTTAACTCTTGATTAC |
| dnaJ | -----------------------AAAGGAA----------TTGAAA----------AATCATAATTCAAAATGA---------TACAAT----------CTAATTTATGTGAGAA-------- |
| dciA-A | ACTGAATGATTGAGATTTTTCCCAGTTATA----------TTGCAT----------TTTTCCTCTTTTTTTAA----------TATAAT----------TTGTTAGAATATTCATAATTTAGT |
| drm-P1 | ------------------------AATACA----------TTGTCA----------ACGGGAATGAAAACGGTT---------TATACT----------TGAGTTGTCAGACCTCTTAGCGA- |
| drm-P2 | -------------------------TATAC----------TTGAGT----------TGTCAGACCTCTTAGCGA---------TACAAT----------AGACGTATAGAA------------ |
| fbp | -----------------------GTTTTAA----------TTGTCT----------CTAAAAGCAGTTATGCGG---------TACTAT----------CATATAAAGGTCCA---------- |
| feuA | ------------------GGAATTTGTCCA----------TGGTGT----------TATATCTGTTCATTCTC----------TATAAT----------TCCAATTGATAA------------ |
| fhuD | ---------------------AAAAATATC----------GTGTCA----------ACCGGCACTTGCAGTGG----------TATAAT----------CACAGATGATAATGATTCT----- |
| flgB | ---------------------CGAACTTCA----------TAGACT----------TTATGCCTGTTATTTCT----------TACAAT----------AAGCATATA--------------- |
| ftsA-P1 | TTTTGTTACACACTTGTAAAGCCACATTCA----------TTGTAT----------TGTTGTTCCGCAAATAA----------TAGAAT----------AGAAATGATCGAAATGTGAGGAGG |
| ftsA-P3 | TTTTAATATTATATTGGCAATAAGTTTAGC----------TTTTCT----------GGGAGTCCATCTTGGTG----------TAGACT----------TGTATTTAGCAGGTATATTCGCAT |
| ftsH | -------------------------ATTGT----------TTGTAT----------TGGAATGATTTTCTATGG---------TACTAT----------TGAACATAGTTGTG---------- |
| fur | -------------------------TATAG----------TTGGAA----------CTCTGCGCGTATTTTGT----------TATAAT----------GAGTCATGGAATGC---------- |
| gabP-P2 | -------------------------AATTT----------TCGACA----------AACTGTATATTTATGA-----------TAGAGT----------TTCAATTATCATAATA-------- |
| gabP-P1 | ------------------------AAACTG----------TATATT----------TATGATAGAGTTTCAAT----------TATCAT----------AATATTCAGTAATGA--------- |
| gabR | -------------------TCGGTATTTTC----------TTATCA----------TTCTGACTTCTCTTTGG----------TATGAT----------GAAAAGTACCA------------- |
| gabT | -----------------------TTGGTAC----------TTTTCA----------TCATACCAAAGAGAAGT----------CAGAAT----------GATAAGAAAATACCGACAGGG--- |
| galE | ------------------------AAATGG----------ATGTGG----------ACCGGTTCTAAACACTA----------TATAAT----------GAAAACAGGTCATT---------- |
| gcaD | TAGAAAATTCTTGCACTTCATGAAGTCTCC----------TTGAAA----------TCAGAAGATATTTAGGA----------TATATT----------TTTCTATGGATAAAAGGGATATTG |
| glnR | GGATTTGATGTTAAGAATCCTTACATCGTA----------TTGACA----------CATAATATAACATCACC----------TATAAT----------GAAACTAAGTTAAGAAAAGGAGGA |
| glpD | TGGCAAAAAGCCGTGAAAGCAGCTATGGCT----------TTTAAA----------TAAAGTAATACTATGG-----------TATAAT----------GGTTACAAGTTAATAAGAACGGTC |
| glpFK | AAAATATGAAAACTTTTTGACGGAAAGTGA----------TTGACA----------CCGCTTTCATGCACTGA----------TACAAT----------TGCACTAGGTTAATACATTGTGAT |
| glpQ | AAAGACACATAAAAGATTAATAGTTTTCCA----------ACACGC----------CGTTTACATCCGTTTTT----------TATTAT----------GAAAG------------------- |
| glpT | TTCCCTAAGGCCCAATTTGAAAATTACCCG----------TTTACA----------TTCGCTCCGGACTATGA----------TAATTT----------AAGAAAGCGCTATCATGATAAG-- |
| gltA | TTTTGAGATTCTTTTGATCTAAATTATATA----------TTGTTT----------ATATCGTTTTGAAAACC----------TACAAT----------GATTATAGAGTTGTTAGATTTTAT |
| gltC | AAAATCTAACAACTCTATAATCATTGTAGG----------TTTTCA----------AAACGATATAAACAATA----------TATAAT----------TTAGATCAAAAGAATCTCAAAATG |
| gltX | ACAGTACTGATACAAAAAGGCTAACTTGTT----------TTGATG----------CCGGGTCTATTTGGTGG----------TAGAAT----------AGATTCATACATTTTTGCCTGA-- |
| glyA | --------------------------ATCT----------TTTACA----------TCGGCCTTAAAAACCATG---------TACAAT----------AGTGATGGTAAA------------ |
| gntR-P1 | AATTTAAATAAAAATTAGAAATGAAAGTGT----------TTGCAT----------AAAAGAAATATTCACGT----------TATCAT----------ACTTGTATACAAGTATACTCCTTG |
| gntZ-P2 | ------------------------CGTTGC----------TGGACT----------GGGATTCATTTTATTGT----------TAAGTT----------TAGTTGTATGAAATTAAGAAGGAG |
| groE | GTAAGCGTGAAAAATTTTTTATCTTATCAC----------TTGAAA----------TTGGAAGGGAGATTCTT----------TATTAT----------AAGAATTGTGTTAGCACTCTTTAG |
| gsiB | AGTGGAAACATACCCAATGTGTTTTGTTTG----------TTTAAA----------AGAATTGTGAGCGGGAA----------TACAAC----------AACCAACACCAATTAAAGGAGGAA |
| gtaB | -------------------------AAAGC----------TTGTTT----------AAAAATGGTTTATCCGA----------TATCAT----------AAAAATGTGTAAA----------- |
| guaA | ATGGGAAAATTTAATTAAAAGAAGATGGTC----------TTGACC----------GCTTATCGACGTGTTGT----------TAGAAT----------TAGTGAATATTATCGGAGTCTGGG |
| guaD | ------------------------TTAAGA----------ATGTTC----------TTTGCATTCTTTTCGGC----------TATACT----------AATAACACTCTATT---------- |
| gutB | CGCTGTCCTTTTATACAGCAGGAAAGGCTG----------TTGAAC----------GTGTTAAAAAGCAGA------------TAAAAT----------GGGGGCAGTAACAGAGAAAACAAA |
| gyrA-TR7 | TACCTATATATTCTAGCAATTTAATGTGTA----------TAATCA----------TAAGTTTATTGA---------------TATAAT----------GGAGAATAGTGAAATCGTATTGAA |
| hbs | -------------------------AATGC----------TTGATA----------TGGCTTTTTATATGTGT----------TACTCT----------ACATACAGAAATTCTTCACTTTGT |
| hemA | TCTAATATAGCATAAGAATTTTAAAATCTG----------TTCACA----------TTTTGTGAAAGAAACTATGT-------TATAAT----------TATTATAAATAATGAGTTCTATGT |
| hemZ | -------------------------CCGGA----------TTGATT----------TTAGCAGTTTATTTCTG----------TACACT----------AAAGAAAGTTTT------------ |
| hrcA-s2 | TTTTTGGCGCTTTTTTTGGGTGAGTTATAA----------TTGACA----------TTTTTCTTGTGGTTTGA----------TACTTT----------TGTTATAGAATTAGCACTCGCTTA |
| htpG | ------------------------ATCTAA----------TTGACA----------ATTGTCATCTTATGTGA----------TAAATA----------GATGCTGAAAA------------- |
| hut | CTAACTTGTTAAAGACTATAAAAAAACCTT----------TTGACT----------TCTGCTGCTGAACCAAT----------TAATAT----------AATACTCAGTTAATAGTTATCAGA |
| ilvB | AAAATTGTCTAATAATTTTAAAAAATGCTG----------TTGACA----------CTGCGTCCAAAGCGGCG----------TAATAT----------GAGTTCAACAAAAGATAAATGCAA |
| mmsA | --------------------------ATGA----------TTGACT----------TATGGGTATTATGCGAT----------TAGAAT----------ATAACCAAGAAATG---------- |
| iolR | ---------------------------CTA----------TTGATT----------AACTTTTGGTTTTTATTA---------TATATT----------TATGTTACGTA------------- |
| iolT | ------------------------TTTATA----------TTGACT----------GAAAGCGTTTTTATAAT----------TATGAT----------AATATCAGATA------------- |
| kdgR | ---------------------AAAAAACTC----------TTCCCA----------AATTTTAAAATTATGG-----------TATTCT----------TTTGTTGTAAC------------- |
| kinC | AATGAATGATTTGGGATACTTTACATATTT----------TACTCA----------ATTATT-TGTCGAAGAATGG-------TACAAT----------AAGTAGAGAAACACAAGCGGCAGG |
| lctE | --------------------------TCTC----------TTGCAA----------AAGTTTGTGAAGTGTTG----------CACAAT----------ATAAATGTGAAATAC--------- |
| licB | -------------------------CTGAG----------TGTTTA----------TGAAAGCGATTTCATAA----------TATGAT----------GATAGCAACAGC------------ |
| licR | -------------------------GTTCA----------TTGACT----------TGCCATTCTCTCCATTA----------TAGAAT----------TTATATAC---------------- |
| lonS1 | GGGTTTTTTTCATGAAGGACATCTTTTCCT----------TTTTCA----------TATCAGAAAGAAAGGG-----------TATACT----------ACGAGGAGACTGTTTTATAGAAAA |
| lonS2 | TTTTATAGAAAATGGAACCATGCCGTTTAT----------TGTACA----------AGGATGAAAAAGTTGTAT---------TATAAT----------GGTTCATACTAAAGTCACGGAGGT |
| lrpC-P1 | ---------------------GAACTGTAC----------TTGTCA----------TTTACAAAAATACCCGA----------GATAAT----------GTGTACAAAATCAAAAAAGAAGGA |
| lysC | GCTCCTTTACGACAAATTGCAAAAATAATG----------TTGTCC----------TTTTAAATAAGATCTGA----------TAAAAT----------GTGAACTAATTTCATAGTTAGATC |
| lytA | ---------------------------AGT----------TTCATT----------GTTTCTTAATTTTTCTT----------TAAAAT----------ATAAAATAGGTTGA---------- |
| lytR | --------------------------AGAG----------TTGTAT----------TTATTGGAAATTTAACT----------CATAAT----------GAAAGTAATTT------------- |
| yufR | ---------------------TTAAAAAAA----------TATGAA----------GTGTTAACGCTTTCT------------TGTAGA----------CTGTAACAAACAATAC-------- |
| malA | -------------------------AACGT----------GTTACG----------GGACGAGCTATCTCATGG---------TATAAA----------TGGAATTGTAAA------------ |
| mecA | TTCACACTGGCCTTGGTTAAGGTTAAGATG----------TGGACG----------GAATGGGTAAAGTGTAG----------TAAAGT----------ACAATTAATCGGGAGCTTAGATGT |
| med-A | -----------------------AGTGGAA----------AAGACA----------ATTTTCATCAATTTTC-----------GACAAA----------TATTAAGAAAAACCTT-------- |
| med-B | ----------------AGTGGAAAAGACAA----------TTTTCA----------TCAATTTTCGACAAAT-----------ATTAAG----------AAAAACCTT--------------- |
| menB | GAGTTTTGACAAGCATCTGACTCATTCACA----------TAGAGA----------ATAAAAGGAGGTCATCA----------TATGGC----------TGAATGGAAAACAAAACGGACATA |
| menE | AGACTTTGCGGTCCAAGCTGTTTTCTTTTC----------AATACA----------GACATTTTACCTCGGA-----------GATGAT----------GACATGCTGACAGAACAGCCCAAC |
| men | ------------------AAGCTTGTTTCT----------TTTTCA----------TTTCTGAAATTAGGTT-----------TATAAT----------AGGTAAGGCAGGCCATTTGGACTG |
| mtrA | ----------------------CATTCACT----------TTGCTT----------TTAGCGGGGCATATGTGC---------TAGAAT----------CGAAATTAAATGTATTC------- |
| nadB | CTTCCTCCATCCGTTCTCCATAAAAAACTC----------TTGAGT----------TTATTTTATCCTTGTGT----------AAATAT----------AGGTGTCAAGACAGGTGTAAACA- |
| nadE | -----------------------TCTCTTG----------TTCACA----------GTGAATGAAGACCTGTGC---------TATATT----------TAATAGGGA--------------- |
| nasA | TAAACGTGTCACAAAAACTTACACATGTCT----------TTTCCA----------GAAAATAATGGTCCTA-----------TATCCT----------TGATTCAGAAAATGTAAAATAATG |
| nasB | GAAAAGACATGTGTAAGTTTTTGTGACACG----------TTTAAT----------GCGTTAACAATGCATTGTGA-------CATAAT----------TTTTAATAGGAGAAAACTTACGAG |
| nfrA | ----------------------TTTCACTT----------TTGAGA----------TCACTTTTTTTCGGA------------TATGAT----------AAAAAGTGAT-------------- |
| nifS | TATGCCATCCTCCTGTTGTTTACACCTGTC----------TTGACA----------CCTATATTTACACAAGGA---------TAAAAT----------AAACTCAAGAGTTTTTTATGGAGA |
| nrgA | AAAAACCATGTCAGGAAATCTTACATGAAA----------ATGTTT----------TATCATTCTTTTTTCTC----------TATAAT----------GAAGAAATATAATAATTGCTTTTT |
| nusA | GCTTAGGTATGAAGGTAAGCGTATATCCAT----------TTGCAA----------TAAAAATATGGTTATGG----------TATAGT----------TTTATTGGAAATGCTAACGATTA- |
| odhA | TTTTGTTTTTTATAAAGGTTTTTTACTATT----------TTGTGA----------ACAATCAAGGTAGAAT-----------CAAATT----------GCAAACAGTGGTAAAATATCGTTG |
| opuA-P2 | ----------------------GATGTTTA----------TAAAGA----------AATGGTACAGAATAAAA----------GAGAAT----------ATGCTGTTTGT------------- |
| opuA-P1 | --------------------AATATGCTGT----------TTGTGT----------GGGAAGTTACATAAATGT---------TACGGT----------AATAAAGATTGC------------ |
| opuB | ------------------------GTAAAC----------TTTTTA----------TTTTATAAACTTTATTC----------TATAAT----------GGGAAGCATTCAATTGTCTG---- |
| opuE | ---------------------------CGC----------TTGAAT----------GGCCGGGAATACTTTGT----------TAGGTT----------AAGTTACCAAG------------- |
| pabB | --------------------------GAAA----------TTCACT----------TTTTTCACTAACAACAT----------TGCTTT----------ACAATTAAAAACAAGTABR----- |
| pbpD | AAAAAACTAAGGAATCTTCTAAATTTAACC----------TTCTCG----------TAATCTCAAAAGAATGG----------TACGAT----------ATGGCTAGAATTTAGGAGAAAAGA |
| pbpE | GATCTCTAACTGAAGGATTTTTCAAAATAT----------TTGAAA----------CGTTAGTAGGTTAGTAACG--------TACAGA----------GATATGGGAGGTGGAGGAATGA-- |
| pbpF | ATATAAACCTTCATATCAGCCACCTCCTGC----------TTGCTA----------GTATATCAAAACAATGG----------TATAAG----------TTTCTATTGGCGAGTGCTTCGAAC |
| pdhA | ------------------------AAGGTT----------TTGGCA----------AACTGGGGATCGGCTAAAA--------TATAAT----------ACGACTTACTGCTGATACTTTAGG |
| pdhC | -----------------------AGACGTT----------CTTGAA----------ACAGCAAGAAAAGTGCTTGAAT-----TTTAAT----------CAAACTGCATAATCGAGAGGGAAG |
| perR | -------------------------ATCAA----------TTGACA----------AATTATCGTAGAAAGAGT---------TACACT----------AATTATAAACA------------- |
| pgk | ------------------AAAGGACCTGAC----------TTGGTT----------CTTTCGAATAGAAGCGC----------TATAAT----------GAAAGCGGACAAGGGAA------- |
| phoA | TTCATTATTGTTTACATGATCAACAGCCGC----------ATTTAA----------CAAAGTTTCCC----------------TAACAT----------GATAAACGGAATACATTAAAGGAG |
| phoB-Pv | ----------------AAATCGATTAATAC----------TAGCTT----------AACAGTTTAAAAA--------------TATAAT----------TGGGTTGTCA-------------- |
| phoP-P1 | --------------------------CGAA----------TTGTCG----------GAATGTCCTGCTTTCGC----------TAAAAT----------AAAATCATGAA------------- |
| phoP-P2 | ------------------------TTTCGC----------TAAAAT----------AAAATCATGAAACATGT----------TAAGAT----------GACATAAAAT-------------- |
| phrE-P1 | -----------------------------G----------TTAGGA----------GGCAACCTTTTCGAT------------TATAAT----------GGGAAAATAGAGG----------- |
| pmi | -------------------------AAAGG----------CTGAAA----------CAAAGCTTGAAAAGCTGCACA------TATAAT----------AGATAGGAAGC------------- |
| ppiB | CGAAAGGTGTGGTATAATAGCCGCGACAAG----------GAGAGA----------CAGGCTATAACCTATA-----------CATAAT----------CTCCTTTGAAAATTAAAATAAAGA |
| pssA-P1 | -------------------------GCGTC----------TTGTCC----------TTTTTATGCGGGGGGA-----------TAAAAT----------AGTAAGGAACATG----------- |
| pssA-P2 | -------------------------CATTT----------TTCAAA----------AGGTAACAAATGTTG------------TATAAT----------AATAGAATTTGAA----------- |
| pta | --------------------------CTGT----------TTGAAT----------TTGATTGGAAGAAGAG-----------TATGCT----------AGTAAAAGAAA------------- |
| ptsX | ---------------------------TGC----------TTGTCA----------GATGACAAGTACGGTTG----------TATGAT----------ATAATATTGTGAAG---------- |
| pucA | ------------------------CTTCGT----------TTGACT----------CTTTTTACAAATCCTCT----------TTCTAT----------GTGTTTCATTTT------------ |
| pucF | ------------------------CTGTCA----------ATGAAC----------TATCATGTTGCTCCTTC----------TATAAT----------GAAGTCACCATA------------ |
| pucH | ------------------------TTGCTG----------ATGTAA----------TACGATCATAGTAGCAG----------TAAACT----------GTTGAAAAT--------------- |
| pucI | -----------------------ATAGCCA----------GTGTTA----------TTGTCTGACTCTTCAGT----------TATATT----------AAGTGACATCTAA----------- |
| pucJ | -------------------------ATCCA----------ATGACA----------CCCCTCGACCGGAACGA----------TATTAT----------GTTACTAAAGTT------------ |
| purA | TTTACAATAAATTAATGTTCGGATTTACAA----------TTGACT----------TTCTGTTTCTTCACTGA----------TAAACT----------TGATTTGTTTGAATAGAATCGTTT |
| purE | AATGAATTTTTGTATCGTTCGATAATATCG----------TTGACA----------TTATCCATGTCCGTTGT----------TAAGAT----------AAACATGAAATCAAAACACGACCT |
| pyrR | --------------------------ACGG----------TTGACA----------GAGGGTTTCTTTTCTGA----------AATAAT----------AAACGAAGCTG------------- |
| qcrA | --------------------------TATA----------TTGACC----------TTGCTGAGAGATTCATA----------TATTAT----------GAGGGTGTCTAG------------ |
| rapA | CCGAAATTCGACAATTGCGGTTATTTTGCG----------TTCTTC----------TTTTTCTTGTAAATATGA---------TAAAAT----------ATGACATATCTCGGGTAATTCAAA |
| rapC | ---------------------------GGG----------TTGGGA----------CGGCCTATAAACATGA-----------TAAAAT----------ATGACATAA--------------- |
| rbsR | TTTACAATTAGATTTCTTTTGATATTTTTA----------TTGCTA----------ACTTCGGATTGTTCATGA---------TAATCT----------ATCTATGTAAACGGTTACATAAAC |
| recA | AAAAAATCCGAATATGCGTTCGCTTTTTTC----------TTGGCA----------AATCCCTTCAAACAGGG----------TATAGT----------ATATGTAGTGGTAACATAAAGGAG |
| yaaB-TR6 | -------------TCAAATGACAAAGAACT----------TATACG----------GTGGGACAAAGACTATGC---------TAAAAT----------AGAGGGAAGAGTGATGAAGCAAA- |
| resA | --------------CTTCAAAAAGTAAGAA----------ATGTGA----------AATGAACGTGCAATGA-----------TATAAT----------TGAATGGATCT------------- |
| resD | ------------------------ACACAG----------TTCTCA----------AACTTTCTCACGATTTGA---------TAAAAT----------GAAAGTAACAGA------------ |
| ypuE | -----------------------TATTTCA----------TTGCGT----------ACTTTAAAAAGGATCGC----------TATAAT----------AACCAATAAGGACAAA-------- |
| rpmH-TR1 | TGGTTGCAAGAAATAAAAGCACTAGTGAAG----------TTGACA----------ATGAATAGGTAACGCAAA---------TATAAT----------AAGTAAGACTGTCTTTAACAGCTA |
| rpmH-TR2 | --------------------AAATAAGGTT----------TCGAAA----------GTTGAAAAGGTATGGTAT---------CCTATT----------ATGGTTGCAAG------------- |
| rpoB | -------------------------AAAGT----------TTGACT----------CGGTATTTTAACTATGT----------TAATAT----------TGTAAAATGCC------------- |
| rpoE | ------------ATTAACGCTGTTAAGGGT----------AGCATA----------TTCTGTTTTATTTTGTT----------TATAAT----------GAGAGGTATGGTTTGTA------- |
| rpsd | ATAAACGGTGAAGCAATAATGGAGGAATGG----------TTGACT----------TCAAAACAAATAAATTA----------TATAAT----------GACCTTTGTGTGAAATATTGCAGC |
| rrnAP1 | AGCAATTTATCATTTAATTGATATTATGTA----------TTGACT----------TAGACAACTGAAGGTGT----------TATTCT----------AATATACGTCGCTGATGACGAACA |
| rrnAP2 | CTTTTTTGAAAAGAAAATGCTAAAAAGTTG----------TTGACA----------GTAGCGGCGGTAAATGT----------TATGAT----------AATAAAGTCGCTTAAACGAG---- |
| rrnBP1 | TTTGTTTTATAGATTTTTTTTAAAAAACTA----------TTGCAA----------TAAATAAATACAGGTGT----------TATATT----------ATTAAACGTCGCTGATGCACAGCG |
| rrnBP2 | AGATGCTTCAAAACAACTTGAAAAAAGTTG----------TTGACA----------AAAAAGAAGCTGAATGT----------TATATT----------AGTAAAGCTGCTTCATTGAGAAGT |
| rrnDP1 | ATCACCGAGGATATTCTTTTAAAAAAGGTG----------TTGACT----------CTGATTCTTGACCGTGT----------TATATT----------ATTAAACGTCGCTGATGCGCTTCT |
| rrnDP2 | CAGCGGCGGGAAAATAAATCAAAAAAACAT----------TTGACA----------AAAGAAAGTCAAAATGT----------TATATT----------AATAAAGTCGCTTCAACAAGAAGT |
| rrnG | GGCTCCACCAAAAGTTTTTAAAAAAGGTTA----------TTGACT----------TTGAAGAAGTGACATTG----------TATACT----------AATAAAGTTGCTTTAACAAAGCGG |
| rrnOP1 | AAATAGCTGCGCTTTTTTGTGTCATAACCC----------TTTACA----------GTCATAAAAATTATG------------GATAAT----------CATTTCTGTTGTCTTTTTAAAGAC |
| rrnOP2 | ATGACTAGTAAAAACTTTTTCAAAAAAGTA----------TTGACC----------TAGTTAACTAAAAATG-----------TACTAT----------TAAGTATCGCTTTGAGAGAAGCA- |
| rrnW | AGGCTCCACCAAAAGTTTTTAAAAAAGTTG----------TTGACT----------TTGAAGAAGTGACGTTG----------TATACT----------AATAAAGTTGCTTTAACAAAGCGG |
| rsbR | TTGCAGGTTGCTCAAATAGAGCAACTTTTT----------TTGTTT----------TCAAAAAACATAAACGA----------TATAAT----------AGTGAAATAACGAAAAAATATGTT |
| sacX | TCCCATCCATTGTACAGGCTTTTCATACTA----------TTGCTA----------TACAGCCATGAACAGCA----------TAAAAT----------GAACGTTATTACAGTTATCACCAC |
| scr | ------------------------GTACGG----------TTGCAA----------TTTTTAGGGGAAACAGA----------TATACT----------TAAGTGTGCATCGTAATA------ |
| sdh | CGGAAAATTATAATTTATGTACGCGTTTTC----------TTGACG----------CCCTTTTGAGGGAGGAG----------TAAAAT----------GAAATTGTCAATAAATCTTAATAA |
| sigD | ---------------------ATATTCGAA----------CTGTTA----------AACAAGGTGAAAAAACGA---------TTAATT----------AAGGTATTAGG------------- |
| spo0H | AAAAGTGGAGGCGGGGAGACTTAGATTAAG----------TTGACG----------CTTTTTTGCCCAATACTG---------TATAAT----------ATTTCTATCTACGTGCGCCGGGGG |
| sigI-S1 | --------------------------GAAA----------GGCACG----------AAATCATGTATAGAACGT---------CAGAAT----------GGTTTGTCATAATTGAGACAT--- |
| sigX | -------------------------TTCCC----------TTCCAA----------ATTCCAGTTACTCGTAA----------TATAGT----------TGTAATGTAA-------------- |
| sinI-P1_RNAI_ | -------------ACCATTCGACATCATTC----------TCGTTT----------TTTTTGAGAAAATACGAT---------TATAAT----------AAAGGTATATTGG----------- |
| sinI-RNAII | ------------------------TGGCAA----------ATGACT----------TCCAGAGACTAATGAAGCA--------TACAAT----------AAGTCATGG--------------- |
| sinR-RNAIII_P3?_ | ------------------AGCCAGAAGTCA----------TACCGT----------AAATCCTTTCTGAATGTGC--------TATAAT----------ATCACAAGGAAGGTGAT------- |
| sipS-T5-1 | ------------------------ACCAAG----------CTGAGA----------AACGAACCCAATTAGTA----------TGTAAT----------CAAAATTAAGTAAA---------- |
| spo0A | TTTCCGGCAGTTTTTTTATTTTGATCCCTC----------TTCACT----------TCTCAGAATACATACGG----------TAAAAT----------ATACAAAAGAAGATTTTTCGACAA |
| spo0B | GGAACATGATATTTCTGGGAAAAACAATTG----------TTTTTC----------TAACAAAGCCTTCTCTGT---------TATAAT----------TCATAATACACACTTATACAGACT |
| spo0E | TGAAAAATTAACTTATTTAATGAAAATATG----------TTTACA----------AATAAAGTATAATCTGT----------AATAAT----------GCACAATAACCCAATCAAACTTGT |
| spo0F-P2 | ATATCAGTATACAACAAAAGAGAAAATGCT----------CAGAAA----------ATGTCGTAAAGTAGACTAT--------TATAAT----------TAAAGGAAATAGGAAAATCAAACA |
| spoIIE | CGAAGATTTCTTTGGTATTGTTACCTTCTT----------TTGACA----------AAATCCTATCTGTGCTTTCGC------TATAAT----------GACAGGCAACGAATATAACAGGTG |
| spoIIG | TGAAAAATTGTATTTTCCTCTCAACATTAA----------TTGACA----------GACTTTCCCACAGAGCTTGCTT-----TATACT----------TATGAAGCAAGAAGGGGAACAGCG |
| srfAA | TCCCGCATGAAACTTTTCACCCATTTTTCG----------GTGATA----------AAAACATTTTTTTCATT----------TAAACT----------GAACGGTAGAAAGATAAAAAATAT |
| tagA | -------------------------TAATG----------TTAATC----------CTTTGTTGAAGATTTATGT--------TAAAAT----------ATAAGGTAGCT------------- |
| tagC | -------------------------TTCTA----------TTGAAT----------ACCGAACGTATGTTTGC----------TTTAAT----------GTAATTAGTTGC------------ |
| tagD | -------------------------AGTAC----------TTAACC----------TTTTTTAGGCGGTATGC----------TATAAT----------TAATGATCAGTG------------ |
| tet | TGGTCAAATTTTTATAAAAAAAGTAAAAGT----------TTAATC----------CTTAGTCTATATATAA-----------TAAGAT----------CATATCAATCAAATGTAGGGGGAG |
| thrS | ----TTTAAAAAAAAGGAAACGCGATCGTG----------TTGATT----------TTTTGGATTGAACAATT----------TATAAT----------ACATAGGAGATTAAGAAAGACACA |
| treP | ---------------------------GTG----------TTGACT----------ACCTGTATATACAGGAA----------TACAAT----------ATGATTATAA-------------- |
| trpE | AAAGTTGTCGTATTGAGGCCCGATTTATCA----------TTGACA----------AAAAATACTGAATTGTAA---------TACGAT----------AAGAACAGCTTAGAAATACACAAG |
| trxA | --------------------------AAAA----------TAGCGT----------GAACGAATGGGAGATGC----------TATACT----------AAAAATCATCATTTCACATTGGAG |
| tyrS | CTGTCAACAATGGAGGATTAAAAGGCGGCG----------TTGACA----------CAGGATTTTATTTATGT----------TAAAAA----------TGATATAGCTTCATATGAAAAGGT |
| ureA-P3 | --------------------------TTCT----------TTGAAT----------TAATAGGCCTCTTCTA-----------TATAAT----------GATGACATAAGTTG---------- |
| valS | ------------------------AGATGA----------TTGACG----------AATCAAAAACACTTTTAC---------TATAAT----------AAAGAACATAAATAA--------- |
| veg | TTATTAACGTTGATATAATTTAAATTTTAT----------TTGACA----------AAAATGGGCTCGTGTTG----------TACAAT----------AAATGTAGTGAGGTGGATGCAATG |
| wapA | -------------------------AAATA----------TTGTAA----------TGATATTTCAGTCTAGT----------TAAGAT----------TATTGAGTAA-------------- |
| xpt | -------------------------CAGCC----------TATGCA----------AGAGATTAGAATCTTGA----------TATAAT----------TTATTACAATA------------- |
| xsa | --------------------------GTCG----------TTGACA----------TGTACGAACATATATAA----------TATGGT----------TACTTTAAAAGCGC---------- |
| xylR | ------------AACTTTCTGAAAAAGATG----------TTGAAA----------AAGTCGAAAGGATTTTA----------TAATAT----------TAAGTCAAGTTAGTTTGTTTGATC |
| yaaA-TR5 | --------------------------CCCT----------TTCCCT----------AATTCGTTTTTTTTTAG----------TACAAT----------TAGATATTAGTGATATTTG----- |
| ybbB | ----------------------GCTTTATA----------TAGGAA----------AACTTTCATTTATTTGG----------TACAAT----------TTTTATTGAAAA------------ |
| yccC | ------------------------GATCTT----------TTGACT----------GAATAGATAAAATGTAC----------AATGAT----------TAATCATCATA------------- |
| ycdH | ----------------------ATTTATTC----------TTGCAA----------AACGTAATGACTTCGGTT---------TATTAT----------GATATAGGATTACAAAATCGTTAT |
| yciA | ------------------------TTTCTC----------TTGATT----------TTCAACAGTGAACCGAT----------CAAAAT----------AAATAGTAATTATTACGATTTGTT |
| yciC | -----------------------AAAACCG----------TTGACA----------AAAAGGAAAAAAGACCA----------TACAAT----------TTAAGTCGTAACAATTACGTTTTA |
| yczA | --------------------------AGAA----------TTGACT----------TCGTTTCATGAACCGAG----------TATTAT----------AAACTCTACAAA------------ |
| yfhR-P3 | ---------------------------ACC----------TGGTAT----------GGAATATTTCAGTGTTTTTCGG-----TAAAGT----------AAAACAAGTGT------------- |
| yfhR-P5 | --------------------------TTGA----------TTGGCC----------TTCTTCGTTCAAATAAGG---------CATAAT----------TTGCTGAAAGG------------- |
| yfmP | ------------------------TTAACG----------TTTACG----------TTAAGGTTCAAAAGGTG----------TATAAT----------GGTAACAGAAA------------- |
| yhaG | ------------------------AAAGTC----------TGGCTA----------TGCAAACCGTCCGTTTGG---------TATACT----------GTTTGCATAACACATTCTGTAAAG |
| yjcI | -------------------------AAGTG----------TTGAAA----------TAAACTGTGAATTGCGC----------TAATAT----------AAAACAATCAGAA----------- |
| exuP1 | --------------------------GAGA----------TTGATC----------CCAAAGGAATATAAAGG----------TAAAAT----------AAAAACAAATCAAAA--------- |
| yklA | ---------------TTTATACGCGAAAAA----------TTGACA----------TTTCAAATTTAATTGTGTACAA-----TTTAAT----------TGTATAA----------------- |
| ykoL | --------------------------ATTC----------ATACCA----------CGTTCATTTAAAAAGAG----------TATCTT----------TTGTATAGGAT------------- |
| ykuN | ---------------------ATTTATCTG----------TTGACA----------ATGAAAATCATTATCATT---------TAAAGT----------GATAC------------------- |
| ykvW | --------------------------ATAA----------TTGAAA----------TTCTCTTCGTGCGTGC-----------TATAAT----------AAAGGAAGACAT------------ |
| ffhrpsp | AGTTAATCGCCGCTTTGACAAGATAAAAAC----------TTGACA----------GTGTCATTAAAACCGTG----------TAAACT----------AAGTTATCGTAAAGGGATTTGACT |
| yneI | -----------------------TCGTACT----------ACTACT----------AATCCTTTTGTTTTTGG----------TACAAT----------AAGACTATTAT------------- |
| yneJ | ------------------------TCAAAA----------TGGTTT----------TTTTTATTGTTTTGGAG----------TATAGT----------ATATAGTATCAA------------ |
| des | ----------------GTGTGCTACTACAA----------AAGACT----------TCTCTCATTAGCG--------------TATACT----------GAACCGAGA--------------- |
| sigA-P2 | --------------------------AACA----------ATAGCA----------TCTTTGTGAAGTTTGTAT---------TATAAT----------AAAAAATTGTGAT----------- |
| sigA-P1 | -------------------------TGGCT----------GTGCCA----------AAAGGGAATAATGAAA-----------AACAAT----------AGCATCTTTGTGA----------- |
| speD | -------------------------GCACC----------TTGCAA----------ATTAGACTTAAACACAG----------TATACT----------ATTTTTCGTGAA------------ |
| ytkD | ------------------------AAAGGC----------TTCCGA----------AGAAACGTAACTGTGG-----------TATGAT----------GTATGGAAGAT------------- |
| ytrA | ------------------------AAAGGA----------TTGACT----------TTGTGAGTCAAAGTATT----------TATTGT----------ATTAAGTGTACT------------ |
| yuiI | ---------------------------AAG----------TTGACT----------TTCTTTGGAAGAAAACC----------TATTAT----------TTGAGGTG---------------- |
| yuxH | TTTCTTTATGTATATATTATTTTTCATGTT----------TAGACA----------ATTTTCGTCAAATTATTTGA-------TATACT----------TAGGGGTGAAAGCCGCGCGTATTG |
| ywbI | ------------------------TACTTA----------TTGTAC----------ATAAGGTCTCTCTATAGG---------TAAAAT----------ATATATTAAGAAT----------- |
| xynP | -CATTCTGTTTAAACTTTCTGAAAAAGATG----------TTGAAA----------AAGTCGAAAGGATTTTA----------TAATAT----------TAAGTCAAGTTAGTTTG------- |
| xylA | ------------------CTAAAAAAAATA----------TTGAAA----------ATACTGACGAGGTTATA----------TAAGAT----------GAAAATAAGTTAGTTTGTTTA--- |