Factor type | |
---|---|
SWISS-PROT | P06224 |
SubtiList | BG10314 |
Consensus seq. | |
Comment | RNA polymerase major Sigma-43 factor (Sigma A) essential gene |
Link to | Phylogenetic profile , Weight matrix & Motif alignment |
Regulated gene |
Operon | Absolute position | Location | Binding seq.(cis-element) | Exp. | Reference | Year |
---|---|---|---|---|---|---|---|
abnA | abnA | 2949207..2949261 | -48:+7 | CTATTTTTTTGTCTGTACAAATTACAGCATAGTGACTACAATAAAG GGGATACCG |
beta-gal,PE | Raposo MP, et al. | 2004 |
abrB | ND | 45188..45307 | ND | TTCGGTAGTTTCCAAGACATTACTGACTATAAGA ACTAATTCTTACAATCAATAGTAAACAAAATGATTGACGATTATT--- GGAAACCTTGTTATGCTATGAAGGTAAGGATTTTGTCGAAT |
PE | Perego M, et al. | 1988 |
acsA | ND | 3038986..3039105 | ND | AAAATACATGCCTTCTTTAAGAATACCAAATTAT AAAGCGTTTTCAACATGGTTTATATTTTAAAAATTGAGAAGAATA--- TGAATATATACTATAATAATTGTGACAACTTCAGCAAAGGG |
PE | Grundy FJ, et al. | 1994 |
acuA | acuA-acuB-acuC | 3038992..3039110 | ND | GCTGAAGTTGTCACAATTATTATAGTATATATTC ATATTCTTCTCAATTTTTAAAATATAAACCATGTTGAAAACGCTT--- -TATAATTTGGTATTCTTAAAGAAGGCATGTATTTTTGATA |
PE | Grundy FJ, et al. | 1994 |
adaA | adaA-adaB | 203492..203611 | ND | TTGAAATTAGTTTATCACATAATCATCTTTACTC ATTTTGTTATCTTGCTATTACATTCTAACCACCTTATTTTTTTCT--- ATTTATGAGGTTATAGTGTAGTTATCAAGAATGCTAAACGG |
PE | Morohoshi F,et al. | 1993 |
addB | addB-addA | 1135497..1135616 | ND | GGGAGAGATGTGCGGAGATAATCAGCTTTTTATA TGTGAAAAGGCCGTTTTTACCAATAGATCAGATTGGTCATTTTCG--- TCAACATTCGATAAAATATAGAGAGATAAAAAGAGAGGGGT |
PE | Haijema BJ, et al. | 1995 |
ahpC | ahpC-ahpF | 4117869..4117915 | -41:+6 | TATGGCTTGACAAAAAATATATATTAATTAATAATTCATATATA ATT |
PE,HM | Antelmann H, et al. | 1996 |
ald | ND | 3277221..3277340 | ND | AAACCTTCCGGCACATGGATTTGTGAAATTTCAC AAATCCATGTTTTTTTATTTTCTTAATCAAACAAAGAATTTTCCA--- AAATATCAAGCTACACTAAAAATATCACATATACAGGAGGA |
PE | Siranosian KJ,et al. | 1993 |
alkA | ND | 203476..203594 | ND | TAACTACACTATAACCTCATAAATAGAAAAAAAT AAGGTGGTTAGAATGTAATAGCAAGATAACAAAATGAGTAAAGAT--- -GATTATGTGATAAACTAATTTCAACCAGCGTGAGTTTTCT |
PE | Morohoshi F,et al. | 1993 |
alsS | alsS-alsD | 3710404..3710524 | ND | TCAATATGCATTCCTTTCCATAGGTTAATAATTC GTATTACATATTAATCATAAGGCGAATCGATATTGGAGGTCAATT--T CCAAAGAGTGTATAGTGAAACTTATCACAAGATATTTAAA |
PE | Renna MC, et al. | 1993 |
amhX | amhX | 324801..324859 | -42:+17 | TTAATTATTCTGAATAGTAGCAATATGTGCTATATTATATACAG CCTATCTTCCTGTTT |
PE | Kempf B, et al. | 1996 |
amyE | ND | 326945..327064 | ND | AGGGAAGCGTTCACAGTTTCGGGCAGCTTTTTTT ATAGGAACATTGATTTGTATTCACTCTGCCAAGTTGTTTTGATAG--- AGTGATTGTGATAATTTTAAATGTAAGCGTTAACAAAATTC |
S1 | Nicholson WL,et al. | 1987 |
ansA | ansA-ansB | 2456045..2456164 | ND | TTTTTCACCTTGAGCTGATTATATCATATAGGTA TTAGGAAGTGTACGCGAATTGAATAATAATGTCTTGCGTATTTTA--- TTTTCCGTGTCTATAATTGCATTAAAAGTATGCGAAAAGCG |
PE | Sun DX,et al. | 1991 |
aprE | ND | 1104913..1105034 | ND | GAGTCTCTACGGAAATAGCGAGAGATGATATACC TAAATAGAGATAAAATCATCTCAAAAAAATGGGTCTACTAAAATA-TT ATTCCATCTATTACAATAAATTCACAGAATAGTCTTTTAAG |
PE | Henner DJ, et al. | 1988 |
araA | araA-araB-araD-araL-araM-araN-araP-araQ-abfA | 2948043..2948088 | -40:+6 | AAAGATTGACAGTATAATAGTCAATTACTATAATAAAATTGTTC GT |
PE,HM | Sa-Nogueira I, et al. | 1997 |
araE | 3484596..3484639 | -39:+5 | AACATTGACAGAAAATGCAAACAAGATTATTCTATATTTGTACG |
PE | Sa-Nogueira I, et al. | 1997 | |
araR | 3484634..3484679 | -40:+6 | AATGTTTTCTTACAAAGAACGCTGTGATATACTGAAATTTGTCC GT |
PE | Sa-Nogueira I, et al. |
1997 | |
argC | ND | 1194204..1194322 | ND | ATTTTTTTTGAGCGGAATTCCCATTGAACAGAAA ATTTATAAATGAATAAAAATATTAAATATACGATTGAATTAATTT--- -TTATTCATGTTATAATGTTAAATAATTTCACAAAGACCAA |
PE | O'Reilly M,et al. | 1994 |
arsR | arsR-yqcK-arsB-arsC | 2656889..2656932 | -39:+5 | TGCTTGCATTATTTTAAAAATCATGAGTATAATAAATACATCAA |
PE,HM | Sato T, et al. | 1998 |
asd | asd-dapG-dapA | 1745127..1745245 | ND | TCTAGTTGAGAATTATCAGGGAAATGACTAAATT TACAGAAAATCTTTCCCAAACTAAAAAATTCGGTCATCACCCGCA--- -TATTCTATGGTAAAATAAAACGTAAAATCATAGTCAAATC |
PE | Chen NY,et al. | 1993 |
bglC | ND | 1939679..1939798 | ND | CTTATTCATTGGAGGTAGAGCAAATTGACAGGCT TTTAAACCTCCCCAAAACAAGAAATTAGGTTGATAGACAATCATG--- AGAAAGATTTTTACAATGAGTTCGTGCTCATAAGAAGTGTA |
S1 | Robson LM,et al. | 1987 |
bglP | 4034828..4034874 | AAGCGTTGACATCTCACGAATCTAGTGCTAAAGTATACCTACAA ACA |
PE | Le Coq D, Lindner C, et al. | 1995 | ||
bsrB | 2095317..2095365 | -43:+6 | CTGACCTCTTGATTAAAAGCGCCTGATGGTGTACTATATTAAAG AAGCT |
Northern blat | Ando Y., et al. | 2002 | |
ccdA | ccdA-yneI-yneJ | 1922295..1922343 | -44:+5 | TCAAATGAGAAGGAGTATAATGTCTCAATGTCAAATTAAATTATA TAAG |
Northern blat, PE | Schiott T, et al. Schiott T, et al. |
1997 2000 |
ccpC | 1485275..1485350 | -44:+32 | GGGCTTGAATAAGAAACTAAGATTTTATTAGAATGGGAGATAAGA AAAACTTATTGATAACAAAAAGGAGGACGAC |
PE | Kim, H. J., et al. | 2002 | |
cdd | ND | 2610592..2610711 | ND | TTATTTTTTTGCCAAAGCTGTAATGGCTGAAAAT TCTTACATTTATTTTACATTTTTAGAAATGGGCGTGAAAAAAAGC--- GCGCGATTATGTAAAATATAAAGTGATAGCGGTACCATTAT |
S1 | Wang LF, et al. Song BH,et al. |
1984 1989 |
cggR | 3482888..3482943 | -42:+14 | CTTAACAGTTGAATAAACAATTCCACCCTGTTAAAATAATTAAA GAAAGCAGAAAT |
PE | Ludwig H, et al. | 2001 | |
citA | ND | 1020238..1020357 | ND | GAAGCCATTTGAAATCCATTTCTATTCTCCCTCT GATTAATATTTTTAATTAATTCCCTTTAAAATATTGATTATTTTT--- TAAATATTATATTTACTATAATAACAGAAAAGGATAGGGGG |
PE | Jin S, et al. | 1994 |
citB | aconitase | 1925719..1925838 | -102:+18 | ACAGTAAAAATTACCGGTACATTTTTCTCATAA GTCGAACTTATTGTATTTAATAAAAACATTGATATTTACTTATGT--A TGATTTTGTTTTAATATGAAATTGTGAGAAAATTGTGATGG |
RO RO |
Fouet A, et al. Whipple FW,et al. |
1990 1992 |
citR | ND | 1020291..1020410 | ND | TGGATGTTTCTACACATGTAATTCCCTTTAATCC GTAATGTACCATTTGTATTCCCCCTATCCTTTTCTGTTATTATAG--- TAAATATAATATTTAAAAAATAATCAATATTTTAAAGGGAA |
PE | Jin S, et al. | 1994 |
citZ | ND | 2981485..2981604 | ND | AACCCGCAAATAAAGGCGTTTTTTCGGGGAAATC ACAGAATGGAAAAAAAAAATTATAGGTAAACATTTAACAAATGTC--- TGATTATTGTTTATAATGAGAATAGGCTTAAACTTAAATAA |
PE | Jin S, et al. | 1994 |
clpE | 1437231..1437274 | -39:+5 | AGACTTGAAAGTCAAAGATAGTCAGAGTATACTATTAATCAAAG |
PE | Derre I, et al. | 1999 | |
clpE | 1437112..1437154 | -38:+5 | TGGTTTGAATGCCGTTAAGTTTGCCGTATACTAATAGTCAAAG |
PE | Derre I, et al. | 1999 | |
clpP | clpP | 3545111..3545180 | ATCTGACATACGATGGTTTGAACCCCTGTATTTTTGGGGAAAATGG GAAAAAGAGACGACTTTGCATATC |
PE,HM | Gerth U., et al. | 1998 | |
clpX | clpX | 2885184..2885233 | -46:+4 | AACACATTGTTACCGTCTTTTTGGAAAGTATGGTAAAATGCAATAC ATAC |
PE | Gerth U., et al. | 1998 |
codV | codY-codW-codX-codY | 1686420..1686468 | -43:+6 | GTATTGATTGCAACCTGAGCGCGATTTGTGATACCATTTAAAAG CCCTT |
PE | Slack FJ, et al. | 1995 |
comA | ND | 3252500..3252618 | ND | AAGTGAAGGAAAGGGCTTTAAGGCTGATATTGAA ATCGAATTGTAATGGATTTATAACGGAAACGACTTGGCACAGGCC--- -AAGTCTTTTTTATAAAATGGAAAAGAGTGAGTAAAAGGGA |
S1 | Weinrauch Y,et al. | 1989 |
comC | ND | 2864411..2864532 | ND | TCCGGCTCCGGCAGAATCAAAAAAAGATTCTGCC GTTTTTTTCATGTGTAAAATTGAATATTCCCAATTGGAGCTCAGG-AT GTCCATTTTGCTACAATCCATACCAGAACTCAATGAGTAAA |
PE | Mohan S,et al. | 1990 |
comEA | comEA | 2641238..2641357 | ND | CAAGGCGCAGAAATCAAAAACCATCGTTTCCTAA AACGATGGTTTTTTAAAATGCTTTTTTATGCTTTTGCAGTACAGA--- CGAACGTATGACATACTCGTCTACACATGAAACTGCTTTTT |
PE | Hahn J, et al. | 1993 |
comFA | comFA-comFB-comFC | 3642587..3642706 | ND | GTGTTTTAAATAAGGCCAAATCTCCGTTTTTAGA GCGGAGATTTTTTTATATTCTTATTTTAATAGTTGGACAGAAAAT--- ATTCATTCAGGCATACTGTTTCGAAAGGAGGCGTGCTATGT |
PE | Londono-Vallejo JA, et al. | 1993 |
comGA | ND | 2559313..2559432 | ND | CTTTTTTCTTGCCAGAAAGAATTGGTTTTTCAGC ATATAACATCTCACAAAATCACGTTTTCCCTGTTTGATTACCTTT--- TCTTCTTTTTCTACAATATGCGTTGAAAGGAGAGGGAATCA |
PE | Albano M, et al. | 1989 |
comK | ND | 1116276..1116396 | ND | TATTACTAGTCATTTAGTACCATTAAATATCATT AAAAGATGATTTTATCTTAAATGTTAAAAAAACCTGTCGTTTTAC--A AAAACAGATGATAGATTATTAGTATAAATTTTGCAGAAAAA |
PE | van Sinderen D,et al. | 1994 |
comQ | ND | 3255994..3256113 | ND | TTTTTTCGTTCTACCGATACAATAAATGGATAAA GTATTATATGATTGTTAAAAAACGAAAAACCTGCTGTCCTTTAAA--T GTCCCATTTAGTAAAATGGAATGGGAGGGGGGAAGTCGTT |
PE | Weinrauch Y,et al. | 1991 |
cspB | ND | 983904..984022 | ND | TTCCGTAAATAAATATCAAATTGAAAAATAAATA TGGTATTTTCCGAAAAAAATTTCAATAAGCAGTTGTTTTTTCTG---A AGATTACTGGTAGAGTAAAGGTAATTATTTTTGTTCGAAC |
PE | Willimsky G,et al. | 1992 |
ctaA | ND | 1558269..1558388 | ND | TCCAGAAGCCGTCATTCTATTATATTTTTGTGAA CAAAAGGCTCTGGGAATTGCCACAAAACACATATTCGCTTACACT--- TGGAACGTATATAAAATTGCAGCAGTATGTTAAGAAGGTGA |
S1 | Mueller JP,et al. | 1989 |
ctsR | ctsR-yacH-yacI-clpC-radA-yacK | 101363..101414 | ND | CGAGAAAGTTGAAAATTCTCGAGAAACGGCTTATAGTAAGATTA AAGTCAAA |
Northern blat, PE | Kruger E, et al. | 1996 |
cysH | cysH-cysP-ylnB-ylnC-ylnD-ylnE-ylnF | 1629364..1629418 | -39:+16 | AGTCGGGTTGACTTATGTTAGAATTGTGCTAAAATTTACTACAA ATCTAAAAACT |
Northan blot | Mansilla MC, et al. | 2000 |
cysK | 81687..81735 | -41:+8 | AAGTGATTGACAAAAAATTTTGAAATTGATAGATTATATACATA ATACC |
PE | Van der Ploeg JR, et al. | 2001 | |
degQ | ND | 3256332..3256451 | ND | ATTCCTTTGAGTATAAGGACCTATTGAGATTTGC GGTGTCACGCAGGACTTTTTTGCATACTTTTCGGTGAAAAATGAG--- CCGAAAGCAGACACACTATTAGTAACAGATCAAATACCTAG |
S1 | Yang M,et al. | 1986 |
degS | ND | 3645673..3645792 | ND | TGTGCAGCATGCTAGCTGACCCTCCTGCTAAGCA TAAAAGACTGCCTATACAAATTCGTACAGTCTTTAGAATTTTTGT--- GCGTATTTTGGTATCATAAAGAGTAGATAGTATATAAAAAT |
PE | Msadek T,et al. | 1990 |
des | yocE | 2088536..2088583 | -43:+5 | GTGTGCTACTACAAAAGACTTCTCTCATTAGCGTATACTGAACCGAGA |
PE,HM | Cutting S, et al. | 1989 |
dhbA | ND | 3291430..3291469 | -1:-40 | ATATTTGACTGTCACATGACATTTGGATATGATTATTTTT |
HM | Baichoo, N., et al. | 2002 |
divIB | ND | 1592813..1592932 | ND | GTGAAAAATACGAGATTGATATGCACACAGAGGT TGAAATCATCGGCGGAAATCGCTGATTCAAGTTCTGACTGAAGCT--- -GTTCATATGACATACTGTAAGCAAACGAACAAACGGCATCA |
PE | Harry EJ,et al. | 1994 |
dnaA | dnaA-dnaN | 55..174 | ND | TACCAACCCCTGTGGACAAGGTTTTTTCAACAGG TTGTCCGCTTTGTGGATAAGATTGTGACAACCATTGCAAGCTCTC--- GTTTATTTTGGTATTATATTTGTGTTTTAACTCTTGATTAC |
S1 S1 |
Ogasawara N, et al. Moriya S,et al. |
1995 1988 |
dnaJ | dnaJ-yqeT-yqeU-yqeV | 2625156..2625208 | ND | AAAGGAATTGAAAAATCATAATTCAAAATGATACAATCTAATTTAT GTGAGAA |
Northan blot | Homuth G, et al. | 1997 |
dppA | ND | 1359571..1359690 | ND | CAAACATGAATCCTTGAAAGAGGATTCTTTTTTT ATCACTGAATGATTGAGATTTTTCCCAGTTATATTGCATTTTTCC--- TCTTTTTTTAATATAATTTGTTAGAATATTCATAATTTAGT |
PE | Slack FJ, et al. | 1991 |
drm | drm-punA | 2447656..2447714 | -42:+17 | AATACATTGTCAACGGGAATGAAAACGGTTTATACTTGAGTTGT CAGACCTCTTAGCGA |
PE | Schuch R, et al. | 1999 |
drm | drm-punA | 2447638..2447684 | -41:+6 | TATACTTGAGTTGTCAGACCTCTTAGCGATACAATAGACGTATA GAA |
PE | Schuch R, et al. | 1999 |
fabL | yfhR-sspE | 935931..935978 | -43:+5 | ACCTGGTATGGAATATTTCAGTGTTTTTCGGTAAAGTAAAACAAG TGT |
Northern blat, PE | Yamamoto H, et al. | 1999 |
fabL | yfhR-sspE | 936203..936247 | -39:+6 | TTGATTGGCCTTCTTCGTTCAAATAAGGCATAATTTGCTGAAAG G |
Northern blat, PE | Yamamoto H, et al. | 1999 |
fbp | fbp | 4127002..4127044 | -46:+5 | GTTTTAATTGTCTCTAAAAGCAGTTATGCGGTACTATCATATAAAG GTCCA |
PE | Fujita Y,et al. | 1998 |
feuA | ND | 183352..183404 | ND | GGAATTTGTCCATGGTGTTATATCTGTTCATTCTCTATAATTCCAA TTGATAA |
HM | Baichoo, N., et al. | 2002 |
fhuD | ND | 3417411..3417467 | ND | AAAAATATCGTGTCAACCGGCACTTGCAGTGGTATAATCACAGATG ATAATGATTCT |
HM | Baichoo, N., et al. | 2002 |
flgB | fla/che operon | 1690470..1690516 | -1:-42 | CGAACTTCATAGACTTTATGCCTGTTATTTCTTACAATAAGCATA TA |
PE, DP, Western blot | West, J. T., et al. | 2000 |
ftsA | ND | 1595643..1595762 | -102:+18 | AAATGTGAAAAGCACATAAAAATATTCTGTTGTT ATTTTTTGTTACACACTTGTAAAGCCACATTCATTGTATTGTTGT--- TCCGCAAATAATAGAATAGAAATGATCGAAATGTGAGGAGG |
PE lacZ assay |
Gonzy-Treboul G,et al. Fukuchi K, et al. |
1992 2000 |
ftsA | ND | 1595384..1595503 | -102:+18 | GTACATATGATGAAATGGTATTTGTTTCCGGTTT CTTTTTTAATATTATATTGGCAATAAGTTTAGCTTTTCTGGGAGT--- CCATCTTGGTGTAGACTTGTATTTAGCAGGTATATTCGCAT |
PE lacZ assay |
Gonzy-Treboul G,et al. Fukuchi K, et al. |
1992 2000 |
ftsH | 76910..76959 | -42:+8 | ATTGTTTGTATTGGAATGATTTTCTATGGTACTATTGAACATAG TTGTG |
PE | Deuerling E, et al. | 1995 | |
fur | 2449497..2449544 | -39:+9 | TATAGTTGGAACTCTGCGCGTATTTTGTTATAATGAGTCATG GAATGC |
PE,HM | Fuangthong M, et al. | 2002 | |
gabP | 686148..686196 | -40:+9 | AATTTTCGACAAACTGTATATTTATGATAGAGTTTCAATTATCA TAATA |
PE,HM | Ferson AE, et al. | 1996 | |
gabP | 686137..686186 | -42:+8 | AAACTGTATATTTATGATAGAGTTTCAATTATCATAATATTCAG TAATGA |
PE,HM | Ferson AE, et al. | 1996 | |
gabR | gabR | 441073..441123 | -45:+6 | TCGGTATTTTCTTATCATTCTGACTTCTCTTTGGTATGATGAAAA GTACCA |
PE | Belitsky, B. R., et al. | 2002 |
gabT | gabT-gabD | 441072..441128 | -40:+17 | TTGGTACTTTTCATCATACCAAAGAGAAGTCAGAATGATAAGAA AATACCGACAGGG |
PE | Belitsky, B. R., et al. | 2002 |
galE | 3990006..3990054 | -41:+8 | AAATGGATGTGGACCGGTTCTAAACACTATATAATGAAAACAGG TCATT |
PE | Krispin O, et al. | 1998 | |
gcaD | gcaD-prs-ctc | 56219..56338 | ND | TTTTTAATTCTGATTTTTCAAACTTAGTTGCACT CAATAGAAAATTCTTGCACTTCATGAAGTCTCCTTGAAATCAGAA--- GATATTTAGGATATATTTTTCTATGGATAAAAGGGATATTG |
RO beta-gal |
Whipple FW,et al. Hilden I., et al. |
1992 |
glnR | glnRA operon | 1877028..1877147 | ND | AAAAGCAATTAATTTAAATTTTTTAAAAATTTCTCCTGGATTTGATGTTA AGAATCCTTACATCGTATTGACACATAAT---ATAACATCACCTATA ATGAAACTAAGTTAAGAAAAGGAGGA |
RO | Strauch MA,et al. | 1988 |
glpD | ND | 1004092..1004210 | ND | ATTGGAAGAAGAAAAACGAAATGAGCTGTATAAA GGCTGGCAAAAAGCCGTGAAAGCAGCTATGGCTTTTAAATAAAGT--- -AATACTATGGTATAATGGTTACAAGTTAATAAGAACGGTC |
PE | Holmberg C,et al. | 1991 |
glpF | ND | 1001585..1001704 | ND | CTGTAGCTGTCACAACATCTAATACCAAATTGTG GAAAAAATATGAAAACTTTTTGACGGAAAGTGATTGACACCGCTT--- TCATGCACTGATACAATTGCACTAGGTTAATACATTGTGAT |
PE | Holmberg C,et al. | 1990 |
glpQ | glpQ | 233917..233992 | -1:-76 | AGCATGTTTAAGAAAGACACATAAAAGATTAATAGTTTTCCAACACGC CGTTTACATCCGTTTTTTATTATGAAAG |
Northern blat, PE | Antelmann, H., et al. | 2000 |
glpT | glpT-glpQ (glp operon) | 235454..235571 | ND | AAAATATAATTGCATTTAGTAAAAGGATAATATT CACTTCCCTAAGGCCCAATTTGAAAATTACCCGTTTACATTCGCT--- CCGGACTATGATAATTTAAGAAAGCGCTATCATGATAAG |
S1 | Nilsson RP,et al. | 1994 |
gltA | glutamate synthase operon | 2013881..2014000 | -103:+8 | GCGCACGTCCATGTTTGTCTCACATCCATCTATC TCATTTTGAGATTCTTTTGATCTAAATTATATATTGTTTATATCG--- TTTTGAAAACCTACAATGATTATAGAGTTGTTAGATTTTAT |
S1 | Bohannon DE,et al. | 1989 |
gltC | glutamate synthase operon | 2013846..2013965 | ND | TCCTCTCCCCCGATCAATTTCCGATAATACCGGT CATAAAATCTAACAACTCTATAATCATTGTAGGTTTTCAAAACGA--- TATAAACAATATATAATTTAGATCAAAAGAATCTCAAAATG |
S1 | Bohannon DE,et al. | 1989 |
gltX | ND | 110893..111010 | ND | ATTTACAGGCCGGGCGGAAGGAATAGCGGCTCAG GCGACAGTACTGATACAAAAAGGCTAACTTGTTTTGATGCCGGGT--- CTATTTGGTGGTAGAATAGATTCATACATTTTTGCCTGA |
S1 | Gagnon Y,et al. | 1994 |
glyA | 3789499..3789544 | -41:+5 | ATCTTTTACATCGGCCTTAAAAACCATGTACAATAGTGATGGTA AA |
PE | Saxild HH, et al. | 2001 | |
gntR | gntRKPZ | 4112302..4112422 | -105:+16 | TAATTGATCTGGAAATACATACCATGCAATATGGTAAAAATTTAAATAAA AATTAGAAATGAAAGTGTTTGCATAAAAGAAATATTCACGTTATCAT ACTTGTATACAAGTATACTCCTTG |
S1 | Fujita Y,et al. | 1986 |
gntZ | gntZ | 4116036..4116103 | -42:+26 | CGTTGCTGGACTGGGATTCATTTTATTGTTAAGTTTAGTTGTAT GAAATTAAGAAGGAGCTGTAACAC |
S1 | Fujita Y,et al. | 1986 |
groES | groES-groEL | 649282..649401 | ND | GAAAAAGCTAACGGAAAAGGGAGCGGAAAAGAAT GATGTAAGCGTGAAAAATTTTTTATCTTATCACTTGAAATTGGAA--- GGGAGATTCTTTATTATAAGAATTGTGTTAGCACTCTTTAG |
PE | Li M,et al. | 1992 |
gsiB | ND | 493935..494054 | ND | GAAAGCAGACGGACACCGCGATCCGCCTGCTTTT TTTAGTGGAAACATACCCAATGTGTTTTGTTTGTTTAAAAGAATT--- GTGAGCGGGAATACAACAACCAACACCAATTAAAGGAGGAA |
PE | Mueller JP, et al. | 1992 |
gtaB | gtaB | 3664539..3664585 | -41:+6 | AAAGCTTGTTTAAAAATGGTTTATCCGATATCATAAAAATGTGT AAA |
PE | Varon D, et al. | 1993 |
guaA | ND | 691857..691976 | ND | AAGATTCTTCGGCGCTATGGAATGATTCGAGAGA GTTATGGGAAAATTTAATTAAAAGAAGATGGTCTTGACCGCTTAT--- CGACGTGTTGTTAGAATTAGTGAATATTATCGGAGTCTGGG |
PE | Mantsala P,et al. | 1992 |
guaD | guaD | 1382470..1382518 | -41:+8 | TTAAGAATGTTCTTTGCATTCTTTTCGGCTATACTAATAACACT CTATT |
PE,HM PE,HM |
Nygaard P, et al. Beier L, et al. |
2000 2002 |
gutB | glucitol dehydrogenase | 666850..666967 | ND | AGCGTTTTTTGTATATGAAAAAATAAAAGTACAG TGCCGCTGTCCTTTTATACAGCAGGAAAGGCTGTTGAACGTGTTA--- --AAAAGCAGATAAAATGGGGGCAGTAACAGAGAAAACAAA |
PE | Ye R,et al. | 1994 |
gyrA | gyrA | 6814..6933 | ND | AGGCTTTTTTCTGAACAAGATCAGATGCAGCGA TGCCTGCAATACCTATATATTCTAGCAATTTAATGTGTATAATCA--TAA GTTTATTGATATAATGGAGAATAGTGAAATCGTATTGAA |
S1 | Ogasawara N,et al. | 1985 |
hbs | ND | 2385182..2385239 | ND | AATGCTTGATATGGCTT---TTTATATGTGTTACTCTACATAC AGAAATTCTTCACTTTGT |
PE | Micka B,et al. | 1991 |
hemA | ND | 2878247..2878369 | ND | ATTGTCAATAGGAATGCTTCTTTTCCCTGAAGCT TTTTCTAATATAGCATAAGAATTTTAAAATCTGTTCACATTTTGTGAA AGAAACTATGTTATAATTATTATAAATAATGAGTTCTATGT |
PE | Petricek M,et al. | 1990 |
hemZ | hemZ | 1056918..1056963 | -40:+6 | CCGGATTGATTTTAGCAGTTTATTTCTGTACACTAAAGAAAGTT TT |
Northern blat | Homuth G, et al. | 1999 |
hrcA | hrcA-grpE-dnaK hrcA-grpE-dnaK-dnaJ-yqeT-yqeU-yqeV |
2628888..2629007 | -103:+18 | TTATTTGACTCATCAAGGAAATTATTAGGCAATGAAGTTTTTGGCGCTTT TTTTGGGTGAGTTATAATTGACATTTTTCTTGTGGTTTGATACTTT TGTTATAGAATTAGCACTCGCTTA |
PE Northern blot |
Wetzstein M, et al. Homuth G, et al. |
1992 1997 |
htpG | htpG | 4090362..4090407 | -41:+5 | ATCTAATTGACAATTGTCATCTTATGTGATAAATAGATGCTGAA AA |
Northern blat, PE | Schulz A, et al. Versteeg S, et al. |
1997 2003 |
hutP | ND | 4040366..4040485 | ND | TGTTCTGCTTTCTGCGTCACGCTATTACAATAGC AATCTAACTTGTTAAAGACTATAAAAAAACCTTTTGACTTCTGCT--- GCTGAACCAATTAATATAATACTCAGTTAATAGTTATCAGA |
PE | Wray LV Jr, et al. | 1994 |
icd | ND | 2980091..2980210 | ND | CCGATTGAAGAAAGAGCCTAAAGAACCATTGGAG GCTGGCTTGCGTCAATGAGGTTAGCCTCTTGTTCAGACATCAAAA--- TTGGGTTACACTTTAAATTGAATGTTAGGAAAAATCATTTT |
PE | Jin S, et al. | 1994 |
ilvB | ND | 2896500..2896619 | ND | CAATAATGAAAGCGTATACAATATAGATTGATTA ATCAAAATTGTCTAATAATTTTAAAAAATGCTGTTGACACTGCGT--- CCAAAGCGGCGTAATATGAGTTCAACAAAAGATAAATGCAA |
PE | Grandoni JA,et al. | 1992 |
iolA | iolA-iolB-iolC-iolD-iolE-iolF-iolG-iolH-iol-iolI-iolJ | 4083586..4083632 | -39:+8 | ATGATTGACTTATGGGTATTATGCGATTAGAATATAACCAAGAA ATG |
PE | Yoshida KI, et al. | 1997 |
iolR | iolR-iolS | 4083750..4083793 | -39:+5 | CTATTGATTAACTTTTGGTTTTTATTATATATTTATGTTACGTA |
PE | Yoshida KI, et al. | 1997 |
iolT | ND | 675661..675706 | -41:+5 | TTTATATTGACTGAAAGCGTTTTTATAATTATGATAATATCAGA TA |
Nothern blot, PE, FT | Yoshida, K., et al. | 2002 |
kdgR | kdgR-kdgK-kdgA-kdgT | 2324875..2324922 | -43:+5 | AAAAAACTCTTCCCAAATTTTAAAATTATGGTATTCTTTTGTTG TAAC |
PE | Pujic P et al. | 1998 |
kinC | ND | 1517511..1517632 | ND | TTACCGCCGCCTAAGATAAGACATCAAGATATTT GGTAATGAATGATTTGGGATACTTTACATATTTTACTCAATTATT-TG TCGAAGAATGGTACAATAAGTAGAGAAACACAAGCGGCAGG |
PE | LeDeaux JR,et al. | 1995 |
lctE | lctE-lctP | 329230..329277 | -44:+4 | TCTCTTGCAAAAGTTTGTGAAGTGTTGCACAATATAAATGTGAAA TAC |
PE | Cruz Ramos H, e al. | 2000 |
licB | licB-licC-licA-licH | 3960937..3960982 | -40:+6 | CTGAGTGTTTATGAAAGCGATTTCATAATATGATGATAGCAACA GC |
PE, Northan blot | Tobisch S, et al. | 1997 |
licR | licR | 3963022..3963063 | -38:+4 | GTTCATTGACTTGCCATTCTCTCCATTATAGAATTTATATAC |
PE, Northan blot | Tobisch S, et al. | 1997 |
lonA | ND | 2881937..2882055 | ND | TCAATAAAGAATCCGTTTAAACCCTATTTTGATA ATAGGGTTTTTTTCATGAAGGACATCTTTTCCTTTTTCATATCAG--- -AAAGAAAGGGTATACTACGAGGAGACTGTTTTATAGAAAA |
PE | Riethdorf S,et al. | 1994 |
lonA | ND | 2881865..2881984 | ND | CATATCAGAAAGAAAGGGTATACTACGAGGAGA CTGTTTTATAGAAAATGGAACCATGCCGTTTATTGTACAAGGATG--A AAAAGTTGTATTATAATGGTTCATACTAAAGTCACGGAGGT |
PE | Riethdorf S,et al. | 1994 |
lrpC | 475547..475611 | -43:+12 | GAACTGTACTTGTCATTTACAAAAATACCCGAGATAATGTGTAC AAAATCAAAAAAGAAGGATGT |
PE | Beloin C, et al. | 2000 | |
lysC | ND | 2910130..2910249 | ND | GACATCAAAAAAGCCGGTGTTCCGCAGCGGCGGC TCAGCTCCTTTACGACAAATTGCAAAAATAATGTTGTCCTTTTAA--- ATAAGATCTGATAAAATGTGAACTAATTTCATAGTTAGATC |
PE | Chen NY,et al. | 1987 |
lytA | lytA-lytB-lytC | 3662154..3662199 | -39:+7 | AGTTTCATTGTTTCTTAATTTTTCTTTAAAATATAAAATAGGTT GA |
PE | Lazarevic V, et al. | 1992 |
lytR | lytR | 3662248..3662291 | -43:+5 | AGAGTTGTATTTATTGGAAATTTAACTCATAATGAAAGTAATTT |
PE | Lazarevic V, et al. | 1992 |
maeN | 3243747..3243798 | -40:+12 | TTAAAAAAATATGAAGTGTTAACGCTTTCTTGTAGACTGTAACAAA CAATAC |
PE | Tanaka, K., et al. | 2003 | |
malA | glvA-glvR-glvC | 889289..889335 | -41:+5 | AACGTGTTACGGGACGAGCTATCTCATGGTATAAATGGAATTGT AAA |
PE,Northan blot,beta-gal | Yamamoto, H., et al. | 2001 |
mecA | ND | 1228225..1228344 | ND | TGTGACTGTTTTATCATAAAATAGAAATACAAAG GAATTCACACTGGCCTTGGTTAAGGTTAAGATGTGGACGGAATGG--- GTAAAGTGTAGTAAAGTACAATTAATCGGGAGCTTAGATGT |
PE | Kong L,et al. | 1993 |
med | med-comZ | 1205806..1205856 | -40:+11 | AGTGGAAAAGACAATTTTCATCAATTTTCGACAAATATTAAGAA AAACCTT |
PE,HM | Ogura M, et al. | 1997 |
med | med-comZ | 1205806..1205856 | -46:+5 | AGTGGAAAAGACAATTTTCATCAATTTTCGACAAATATTAAGAAAA ACCTT |
PE,HM | Ogura M, et al. | 1997 |
menB | ND | ND | TGGAGCAGCCGCGATTGGTTTGGTAAAATAGTG AGTGAGTTTTGACAAGCATCTGACTCATTCACATAGAGAATAAAA--- GGAGGTCATCATATGGCTGAATGGAAAACAAAACGGACATA |
PE | Driscoll JR,et al. | 1992 | |
menE | ND | 3147838..3147956 | ND | TTCCGTGATCAGCAATATCTAGTAAACCAACAGC TTGAGACTTTGCGGTCCAAGCTGTTTTCTTTTCAATACAGACATT--- -TTACCTCGGAGATGATGACATGCTGACAGAACAGCCCAAC |
PE | Driscoll JR,et al. | 1992 |
menF | menF-menD | 3152843..3152906 | ND | AAGCTTGTTTCTTTTTCATTTCTG--- -AAATTAGGTTTATAATAGGTAAGGCAGGCCATTTGGACTG |
PE | Qin X, et al. | 1996 |
mtrA | mtrA-mtrB | 2384573..2384627 | ND | CATTCACTTTGCTTTTAGCGGGGCATATGTGCTAGAATCGAAATTA AATGTATTC |
HM, SDS-PAGE, bata-gal | Gollnick P, et al. | 1990 |
nadB | ND | 2848707..2848825 | ND | GGCGTTGTCGCTGCATAATCTAAATAAATCATCC GGTCTTCCTCCATCCGTTCTCCATAAAAAACTCTTGAGTTTATTT--- TATCCTTGTGTAAATATAGGTGTCAAGACAGGTGTAAACA |
PE | Sun D,et al. | 1993 |
nadE | nadE | 337721..337766 | -43:+3 | TCTCTTGTTCACAGTGAATGAAGACCTGTGCTATATTTAATAGG GA |
PE | Antelmann H. et al. | 1997 |
nasA | nitrate assimilation gene | 362353..362471 | ND | CTATTAAAAATTATGTCACAATGCATTGTTAACG CATTAAACGTGTCACAAAAACTTACACATGTCTTTTCCAGAAAAT--- -AATGGTCCTATATCCTTGATTCAGAAAATGTAAAATAATG |
PE | Nakano MM, et al. | 1995 |
nasB | nitrate assimilation gene | 362338..362458 | ND | TTTCTGAATCAAGGATATAGGACCATTATTTT CTGGAAAAGACATGTGTAAGTTTTTGTGACACGTTTAATGCGTTAACA ATGCATTGTGACATAATTTTTAATAGGAGAAAACTTACGAG |
PE | Nakano MM, et al. | 1995 |
nfrA | nfrA-ywcH | 3911265..3911309 | -41:+4 | TTTCACTTTTGAGATCACTTTTTTTCGGATATGATAAAAAGTGA T |
PE | Moch C, et al. | 2000 |
nifS | ND | 2848655..2848774 | ND | CCCCTGAACCGATGACTGCAATCGTCTTTTTAG ACATATGCCATCCTCCTGTTGTTTACACCTGTCTTGACACCTATA--T TTACACAAGGATAAAATAAACTCAAGAGTTTTTTATGGAGA |
PE | Sun D,et al. | 1993 |
nrgA | nrgA-nrgB | 3755687..3755784 | ND | TCGATAACATTT CTCAAAAACCATGTCAGGAAATCTTACATGAAAATGTTTTATCAT--- TCTTTTTTCTCTATAATGAAGAAATATAATAATTGCTTTTT |
PE | Wray LV Jr, et al. | 1994 |
nusA | ND | 1730790..1730908 | ND | AAAAAGTGCCATCGTAATATTAGAGTTTCTGTCA CTTGCTTAGGTATGAAGGTAAGCGTATATCCATTTGCAATAAAAA--- TATGGTTATGGTATAGTTTTATTGGAAATGCTAACGATTA |
PE | Shazand K,et al. | 1993 |
odhA | ND | 2110909..2111027 | ND | ATGCTTTTTGGCGTTTGTTTTTTCGAATGATTAA ATTTTTTGTTTTTTATAAAGGTTTTTTACTATTTTGTGAACAATC--- -AAGGTAGAATCAAATTGCAAACAGTGGTAAAATATCGTTG |
PE | Resnekov O,et al. | 1992 |
opuA | opuAA-opuAB-opuAC | 320461..320508 | -43:+5 | GATGTTTATAAAGAAATGGTACAGAATAAAAGAGAATATGCTGT TTGT |
PE | Kemph B, et al. | 1995 |
opuA | opuAA-opuAB-opuAC | 320495..320546 | -47:+5 | AATATGCTGTTTGTGTGGGAAGTTACATAAATGTTACGGTAATAAA GATTGC |
PE | Kemph B, et al. | 1995 |
opuB | opuBA-opuBB-opuBC-opuBD | 3462338..3462392 | -42:+13 | GTAAACTTTTTATTTTATAAACTTTATTCTATAATGGGAAGCAT TCAATTGTCTG |
PE | Kappes RM, et al. | 1999 |
opuE | 727768..727810 | -40:+3 | CGCTTGAATGGCCGGGAATACTTTGTTAGGTTAAGTTACCAAG |
PE | Spiegelhalter F, et al. | 1998 | |
pabB | pabB-pabA pabB-pabA-pabC-sul-folB-folK-yazB-yacF pabB-pabA-pabC-sul-folB-folK-yazB-yacF-lysS |
82785..82834 | -43:+7 | GAAATTCACTTTTTTCACTAACAACATTGCTTTACAATTAAAAA CAAGTA GAAATTCACTTTTTTCACTAACAACATTGCTTTACAA TTAAAAACAAGTA (Two possible sigA binding sit es) |
PE, beta-gal, Northan blot | De Saizieu A, et al. | 1997 |
pbpD | ND | 3232833..3232952 | ND | CGGAAAGATTCTTATGCCAAAGCAAGCTGATTCC GAGAAAAAACTAAGGAATCTTCTAAATTTAACCTTCTCGTAATCT--- CAAAAGAATGGTACGATATGGCTAGAATTTAGGAGAAAAGA |
PE | Popham DL,et al. | 1994 |
pbpE | ND | 3534500..3534619 | ND | AATAGTGAACGGCAGGTATATGTGATGGGTTAAA AAGGATCTCTAACTGAAGGATTTTTCAAAATATTTGAAACGTTAG-TA GGTTAGTAACGTACAGAGATATGGGAGGTGGAGGAATGA |
PE | Popham DL,et al. | 1993 |
pbpF | ND | 1082984..1083103 | ND | TACGATCGTTTTTAAAAAATCGGCTGTCCCATAT GTAATATAAACCTTCATATCAGCCACCTCCTGCTTGCTAGTATAT--- CAAAACAATGGTATAAGTTTCTATTGGCGAGTGCTTCGAAC |
PE | Popham DL,et al. | 1993 |
pdhA | pdhA-pdhB-pdhC-pdhD | 1527498..1527573 | -64:+12 | AAGGTTTTGGCAAACTGGGGATCGGCTAAAATATAATACGACTTAC TGCTGATACTTTAGGGTACCCTAAGTTTGT |
reverse transcriptase mapping Northern blot |
Gao H, et al. Hemila H, et al. |
2002 1990 |
pdhC | pdhC-pdhD | 1529690..1529767 | -70:+8 | AGACGTTCTTGAAACAGCAAGAAAAGTGCTTGAATTTTAATCAAAC TGCATAATCGAGAGGGAAGATGAACGTTTTCC |
reverse transcriptase mapping Northern blot |
Gao H, et al. Hemila H, et al. |
2002 1990 |
perR | 943734..943779 | -41:+5 | ATCAATTGACAAATTATCGTAGAAAGAGTTACACTAATTATAAA CA |
PE,HM | Fuangthong M, et al. | 2002 | |
pgk | pgk-tip-pgm-eno | 3480659..3480716 | -49:+9 | AAAGGACCTGACTTGGTTCTTTCGAATAGAAGCGCTATAATGAAAG CGGACAAGGGAA |
PE | Ludwig H, et al. | 2001 |
phoA | ND | 1017751..1017870 | ND | AGGCAAGATAACGAAAAGCGTTTTTTCATTTCCT TACAAGGCTTTCATTATTGTTTACATGATCAACAGCCGCATTTAA---CA AAGTTTCCCTAACATGATAAACGGAATACATTAAAGGAG |
PE | Hulett FM,et al. | 1994 |
phoB | phoB-ydhF | 621065..621113 | ND | AAATCGATTAATACTAGCTTAACAGTTTAAAAATATAATTGGGTTG TCA |
PE DP | Chesnut RS, et al. | 1991 |
phoP | phoP-phoR | 2977627..2977670 | -39:+5 | CGAATTGTCGGAATGTCCTGCTTTCGCTAAAATAAAATCATGAA |
Northern blat, PE | Pragai Z, et al. | 2004 |
phoP | phoP-phoR | 2977605..2977649 | -39:+6 | TTTCGCTAAAATAAAATCATGAAACATGTTAAGATGACATAAAA T |
Northern blat, PE | Pragai Z, et al. | 2004 |
phrE | 2659450..2659490 | -33:+8 | GTTAGGAGGCAACCTTTTCGATTATAATGGGAAAATAGAGG |
PE, beta-GAL | McQuade, R. S., et al. | 2001 | |
phrI | ND | ND | ND |
PE, beta-GAL | McQuade, R. S., et al. | 2001 | |
pmi | pmi-lytD | 3687717..3687765 | -43:+6 | AAAGGCTGAAACAAAGCTTGAAAAGCTGCACATATAATAGATAG GAAGC |
PE, SDS-PAGE | Margot P, et al. | 1994 |
ppiB | ND | 2434999..2435117 | ND | TTATTTTTTAGTAAAGCTCGGGAGATTCGTTTTC CCCCGAAAGGTGTGGTATAATAGCCGCGACAAGGAGAGACAGGCT--- -ATAACCTATACATAATCTCCTTTGAAAATTAAAATAAAGA |
PE | Herrler M,et al. | 1994 |
pssA | pssA-ybfM-psd | 247502..247547 | ND | GCGTCTTGTCCTTTTTATGCGGGGGGATAAAATAGTAAGGAACATG |
ROMA,beta-gal | Cao M, et al. | 2004 |
pssA | pssA-ybfM-psd | 247562..247606 | ND | CATTTTTCAAAAGGTAACAAATGTTGTATAATAATAGAATTTGAA |
ROMA,beta-gal | Cao M, et al. | 2004 |
pta | 3865381..3865423 | -38:+5 | CTGTTTGAATTTGATTGGAAGAAGAGTATGCTAGTAAAAGAAA |
PE | Shin BS, et al. | 1999 | |
ptsG | ptsGHI, ptsHI | 1458612..1458657 | -37:+9 | TGCTTGTCAGATGACAAGTACGGTTGTATGATATAATATTGTGA AG |
PE Reverse-transcriptase mappin, Northern blot |
Gonzy-Treboul G, et al. Stulke J, et al. |
1989 1997 |
pucA | pucABCDE | 3340079..3340125 | -40:+7 | CTTCGTTTGACTCTTTTTACAAATCCTCTTTCTATGTGTTTCAT TTT |
PE,HM | Beier L, et al. | 2002 |
pucF | pucFG | 3342719..3342765 | -41:+6 | CTGTCAATGAACTATCATGTTGCTCCTTCTATAATGAAGTCACC ATA |
PE,HM | Beier L, et al. | 2002 |
pucH | 3327676..3327719 | -39:+5 | TTGCTGATGTAATACGATCATAGTAGCAGTAAACTGTTGAAAAT |
PE,HM | Beier L, et al. | 2002 | |
pucI | 3752831..3752879 | -43:+6 | ATAGCCAGTGTTATTGTCTGACTCTTCAGTTATATTAAGTGACA TCTAA |
PE,HM | Beier L, et al. | 2002 | |
pucJ | pucJKLM | 3329461..3329506 | -40:+6 | ATCCAATGACACCCCTCGACCGGAACGATATTATGTTACTAAAG TT |
PE,HM | Beier L, et al. | 2002 |
purA | ND | 4155776..4155895 | ND | AACGCTTATAAAACGAATGGAAGCGAACGAATAT AGATTTACAATAAATTAATGTTCGGATTTACAATTGACTTTCTGT--- TTCTTCACTGATAAACTTGATTTGTTTGAATAGAATCGTTT |
PE | Mantsala P,et al. | 1992 |
purE | purEKBCSQLFMNHD | 697612..697731 | -38:+6 | TTGAAGGGAAATTGATCTAAAACACGAACATTAG TAGAATGAATTTTTGTATCGTTCGATAATATCGTTGACATTATCC--- ATGTCCGTTGTTAAGATAAACATGAAATCAAAACACGACCT |
S1 nuclease mapping | Ebbole DJ, et al. | 1987 |
pyrR | pyrR-pyrP-pyrB-pyrC-pyrAA-pyrAB-pyrK-pyrD-pyrF-pyrE | 1617419..1617462 | -40:+4 | ACGGTTGACAGAGGGTTTCTTTTCTGAAATAATAAACGAAGCTG |
PE | Quinn CL, et al. | 1991 |
qcrA | qcrA-qcrB-qcrC | 2364351..2364395 | -39:+6 | TATATTGACCTTGCTGAGAGATTCATATATTATGAGGGTGTCTA G |
PE,HM | Yu J, et al. | 1995 |
rapA | rapA-phrA | 1315046..1315166 | ND | GGTGTTTGAAAAACCCGTGCTTTTTTGTTGCGGT TAGCCGAAATTCGACAATTGCGGTTATTTTGCGTTCTTCTTTTTC--T TGTAAATATGATAAAATATGACATATCTCGGGTAATTCAAA |
PE | Mueller JP, et al. | 1992 |
rapC | 428331..428370 | -37:+4 | GGGTTGGGACGGCCTATAAACATGATAAAATATGACATAA |
PE | Lazazzera BA et al. | 1999 | |
rbsR | rbsR-rbsK-rbsD-rbsA-rbsC-rbsB | 3700304..3700423 | ND | GAGTGAAAACCTTAAATTTTTCAATTATATATA CAATTTACAATTAGATTTCTTTTGATATTTTTATTGCTAACTTCG--G ATTGTTCATGATAATCTATCTATGTAAACGGTTACATAAAC |
PE | O'Reilly M,et al. | 1994 |
recA | ND | 1763786..1763905 | ND | TGATACATTATGATATTTTGATAGGAATCACGCC AAGAAAAAATCCGAATATGCGTTCGCTTTTTTCTTGGCAAATCCC--- TTCAAACAGGGTATAGTATATGTAGTGGTAACATAAAGGAG |
S1 | Cheo DL,et al. | 1993 |
resA | resA-resB-resC-resD-resE | 2420563..2420617 | -50:+4 | CTTCAAAAAGTAAGAAATGTGAAATGAACGTGCAATGATATAATTGAA TGGATCT |
PE | Sun G, et al. | 1996 |
resD | resD-resE | 2417117..2417164 | -44:+5 | ACACAGTTCTCAAACTTTCTCACGATTTGATAAAATGAAAGTAA CAGA |
PE | Sun G, et al. | 1996 |
rpmH | rpmH | 4214428..4214555 | ND | AGGTTTCGAAAGTTGAAAAGGTATGGTATCCTATTATGGTTGCAAGAAAT AAAAGCACTAGTGAAGTTGACAATGAATAGGTAACGCAAATATAAT AAGTAAGACTGTCTTTAACAGCTATTCCTCGA |
S1 S1 |
Moriya S,et al. Ogasawara, et al. |
1985 1985 |
rpmH | rpmH | 4214510..4214560 | ND | AAATAAGGTTTCGAAAGTTGAAAAGGTATGGTATCCTATTATGGT TGCAAG |
S1 | Ogasawara N,et al. | 1985 |
rpoB | 121662..121706 | -41:4 | AAAGTTTGACTCGGTATTTTAACTATGTTAATATTGTAAAATGC C |
PE, SDM | Boor KJ, et al. | 1995 | |
rpoE | 3812161..3812224 | ND | ATTAACGCTGTTAAGGGTAGCATATTCTGTTTTATTTTGTTTATAATG AGAGGTATGGTTTGTA |
Electrophoretic mobility assay | Lopez de Saro FJ, et al. | 1999 | |
rpsD | ND | 3034487..3034606 | ND | ACCTAAAAGTTTACCACTAATTTTTGTTTATTATATCATAAACGGTGAAG CAATAATGGAGGAATGGTTGACTTCAAAACAAATAAATTATATAAT GACCTTTGTGTGAAATATTGCAGC |
PE | Grundy FJ,et al. | 1990 |
rrnA-16S | ND | 30001..30103 | ND | GCGTTAGTCGTCA TTAAGCAATTTATCATTTAATTGATATTATGTATTGACTTAGACA--- ACTGAAGGTGTTATTCTAATATACGTCGCTGATGACGAACAGCTT |
S1 | Ogasawara N,et al. | 1983 |
rrnA-16S | ND | 30060..30179 | ND | CTGAAGGTGTTATTCTAATATACGTCGCTGATGACGAA CAGCTTTTTTGAAAAGAAAATGCTAAAAAGTTGTTGACAGTAGCG--- GCGGTAAATGTTATGATAATAAAGTCGCTTAAACGAG |
S1 | Ogasawara N,et al. | 1983 |
rrnB-16S | ND | 3177931..3178050 | ND | CACACGCTTTAGAAATCATGGCGAGGATTATAGT TTATTTGTTTTATAGATTTTTTTTAAAAAACTATTGCAATAAATA--- AATACAGGTGTTATATTATTAAACGTCGCTGATGCACAGCG |
S1 | Stewart GC,et al. | 1983 |
rrnB-16S | ND | 3177838..3177957 | ND | ATTATTAAACGTCGCTGATGCACAGCGGACACAA ACTAGATGCTTCAAAACAACTTGAAAAAAGTTGTTGACAAAAAAG--- AAGCTGAATGTTATATTAGTAAAGCTGCTTCATTGAGAAGT |
S1 | Stewart GC,et al. | 1983 |
rrnD-16S | ND | 945656..945776 | ND | AACGTCTGCCAGATAGAAACGAAAGGACAGGCTG TCTATCACCGAGGATATTCTTTTAAAAAAGGTGTTGACTCTGATT--- CTTGACCGTGTTATATTATTAAACGTCGCTGATGCGCTTCTG |
Other | Jarvis ED,et al. | 1990 |
rrnD-16S | ND | 945753..945873 | ND | TTAAACGTCGCTGATGCGCTTCTGAGAAAACAAGC TCACAGCGGCGGGAAAATAAATCAAAAAAACATTTGACAAAAGAA--- AGTCAAAATGTTATATTAATAAAGTCGCTTCAACAAGAAGT |
Other | Jarvis ED,et al. | 1990 |
rrnG-16S | ND | 166281..166400 | ND | GCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCG CTAGGCTCCACCAAAAGTTTTTAAAAAAGGTTATTGACTTTGAAG--- AAGTGACATTGTATACTAATAAAGTTGCTTTAACAAAGCGG |
Other | Green CJ,et al. | 1992 |
rrnO-16S | ND | 9437..9555 | ND | AGAAGAACAAGAAGAAGTGTGAAAAAAAGCGCAG CTGAAATAGCTGCGCTTTTTTGTGTCATAACCCTTTACAGTCATA--- -AAAATTATGGTATAATCATTTCTGTTGTCTTTTTAAAGAC |
S1 | Ogasawara N,et al. | 1983 |
rrnO-16S | ND | 9534..9653 | ND | TTTCTGTTGTCTTTTTAAAGACACAAGCATGACC ATTATGACTAGTAAAAACTTTTTCAAAAAAGTATTGACCTAGTTA--- ACTAAAAATGTTACTATTAAGTATCGCTTTGAGAGAAGCA |
S1 | Ogasawara N,et al. | 1983 |
rrnW-16S | ND | 96171..96290 | ND | TGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCC GCTAGGCTCCACCAAAAGTTTTTAAAAAAGTTGTTGACTTTGAAG--- AAGTGACGTTGTATACTAATAAAGTTGCTTTAACAAAGCGG |
Other | Green CJ,et al. | 1992 |
rsbR | rsbR-rsbS-rsbT-rsbU-rsbV-rsbW-sigB-rsbX | 518824..518943 | ND | ACAAATCAGTTTGGCACTCATTGATTTTTAGACA TATTTGCAGGTTGCTCAAATAGAGCAACTTTTTTTGTTTTCAAAA--- AACATAAACGATATAATAGTGAAATAACGAAAAAATATGTT |
PE | Wise AA,et al. | 1995 |
sacX | sacX-sacY | 3940862..3940987 | ND | AAGGTTTTTTTCATTCTAAGAACACCACACACAA CCTTTTTCCCATCCATTGTACAGGCTTTTCATACTATTGCTATACAGC ---CATGAACAGCATAAAATGAACGTTATTACAGTTATCACCACAT A |
PE | Crutz AM,et al. | 1992 |
scr | scRNA | 26335..26387 | -42:+11 | GTACGGTTGCAATTTTTAGGGGAAACAGATATACTTAAGTGTGC ATCGTAATA |
S1 | Struck JC, et al. Struck JC, et al. |
1989 1990 |
sdhC | sdhC-sdhA-sdhB | 2907879..2907998 | -102:+18 | ATTGATAAAATAAAATTTTTCAATCAACTAATCAATTCGGAAAATTATAA TTTATGTACGCGTTTTCTTGACGCCCTTTTGAGGGAGGAGTAAAAT GAAATTGTCAATAAATCTTAATAA |
S1 S1 |
3036777 |
1987 1989 |
sigD | sigD | 1715726..1715776 | ND | ATATTCGAACTGTTAAACAAGGTGAAAAAACGATTTAATTAAGGT ATTAGG |
ND | Allmansberger R | 1997 |
sigH | ND | 116469..116589 | ND | AAAATTGCTTTATCGGAAGAGGTTTTGAAAACGT TTGAAAAGTGGAGGCGGGGAGACTTAGATTAAGTTGACGCTTTTT--T GCCCAATACTGTATAATATTTCTATCTACGTGCGCCGGGGG |
PE | Weir J,et al. | 1991 |
sigI | 1411062..1411116 | ND | GAAAGGCACGAAATCATGTATAGAACGTCAGAATGGTTTGTCAT AATTGAGACAT |
DB, PE | Zuber, U., et al. | 2001 | |
sigX | sigX-rsiX | 2414453..2414496 | -40:+4 | TTCCCTTCCAAATTCCAGTTACTCGTAATATAGTTGTAATGTAA |
RO,PE,beta-gal | Huang X, et al. | 1997 |
sinI | sinI-sinR | 2551503..2551562 | -53:+7 | ACCATTCGACATCATTCTCGTTTTTTTTGAGAAAATACGATTATAATA AAGGTATATTGG |
PE,HM | Shafikhani SH, et al. Gaur NK, et al. |
1988 2002 |
sinI | sinI-sinR | 2551584..2551629 | -41:+5 | TGGCAAATGACTTCCAGAGACTAATGAAGCATACAATAAGTCAT GG |
PE,HM | Gaur NK, et al. | 1988 |
sinR | sinR | 2551821..2551880 | -48:+12 | AGCCAGAAGTCATACCGTAAATCCTTTCTGAATGTGCTATAATATCAC AAGGAAGGTGAT |
PE,HM | Gaur NK, et al. | 1988 |
sipS | 2432802..2432850 | -40:+9 | ACCAAGCTGAGAAACGAACCCAATTAGTATGTAATCAAAATTAA GTAAA |
PE, Northern blot, beta-gal | Bolhuis A, et al. | 1996 | |
speD | 2965967..2966012 | -40:+6 | GCACCTTGCAAATTAGACTTAAACACAGTATACTATTTTTCGTG AA |
PE,Northan blot | Sekowska A, et al. | 2000 | |
spo0A | ND | 2518244..2518363 | ND | TATTTATGGAAAAGAAAAAGCAAGCTGACTGCCG GAGTTTCCGGCAGTTTTTTTATTTTGATCCCTCTTCACTTCTCAG--- AATACATACGGTAAAATATACAAAAGAAGATTTTTCGACAA |
S1 | Chibazakura T,et al. | 1991 |
spo0B | ND | 2853821..2853940 | ND | TCTGCCTGGCTGCAAATCAACCAAAGCCAGA AAAAAGGAACATGATATTTCTGGGAAAAACAATTGTTTTTCTAACAAAGC CTTCTCTGTTATAATTCATAATACACACTTATACAGACT |
S1 | Trach K,et al. | 1989 |
spo0E | ND | 1429840..1429959 | ND | ATTGTTCTTCTAATCCTATCAATATATCTATTAT ACCTGAAAAATTAACTTATTTAATGAAAATATGTTTACAAATAAA--- GTATAATCTGTAATAATGCACAATAACCCAATCAAACTTGT |
PE | Perego M,et al. | 1991 |
spo0F | ND | 3809002..3809123 | ND | ATTTTCAACATAAGTGAATCCTCCTTTATAACGT ACAATATCAGTATACAACAAAAGAGAAAATGCTCAGAAAATGTCG-TA AAGTAGACTATTATAATTAAAGGAAATAGGAAAATCAAACA |
S1 | Trach K, et al. | 1988 |
spoIIE | ND | 70401..70522 | -106:+16 | TTCTTTTCATAAACGAATATCAAGGCAGAAACCGTCGAAGATTTCTTTGG TATTGTTACCTTCTTTTGACAAAATCCTATCTGTGCTTTCGCTATAA TGACAGGCAACGAATATAACAGGTG |
PE | York K,et al. | 1992 |
spoIIGA | ND | 1602939..1603049 | ND | TCGACAAATTAAGCAGATTTCCCTGAAAAATTGTATTTTCCTCTCAACAT TAATTGACAGACTTTCCCACAGAGCTTGCTTTATACTTATGAAGCA AGAAGGGGAACAGCG |
PE | Kenney TJ,et al. | 1989 |
srfAA | srfAAB-comS-srfACD | 376132..376251 | ND | AAAAATATTGCTGTAAATAAACTGGAATCTTTCG GCATCCCGCATGAAACTTTTCACCCATTTTTCGGTGATAAAAACA--- TTTTTTTCATTTAAACTGAACGGTAGAAAGATAAAAAATAT |
PE | Nakano MM, et al. | 1991 |
tagA | tagA-tagB | 3680283..3680329 | -42:+5 | TAATGTTAATCCTTTGTTGAAGATTTATGTTAAAATATAAGGTA GCT |
PE | Mauel C, et al. | 1995 |
tagC | 3682387..3682432 | ND | TTCTATTGAATACCGAACGTATGTTTGCTTTAATGTAATTAGTTGC |
CAT assay, beta-gal | Cheo DL, et al. | 1991 | |
tagD | tagD-tagE-tagF | 3680116..3680161 | -40:+5 | AGTACTTAACCTTTTTTAGGCGGTATGCTATAATTAATGATCAG TG |
PE | Mauel C, et al. | 1995 |
tetL | ND | 4188183..4188268 | ND | A ATCTGGTCAAATTTTTATAAAAAAAGTAAAAGTTTAATCCTTAGT--- -CTATATATAATAAGATCATATCAATCAAATGTAGGGGGAG |
S1 | Sakaguchi R,et al. | 1988 |
thrS | ND | 2960515..2960593 | ND | TTTAAAAAAAAGGAAACGCGATCGTGTTGATTTTTTGG--- ATTGAACAATTTATAATACATAGGAGATTAAGAAAGACACA |
PE | Gendron N,et al. | 1994 |
treP | treP-treA-treR | 849619..849660 | -38:+4 | GTGTTGACTACCTGTATATACAGGAATACAATATGATTATAA |
PE | Schock F, et al. | 1996 |
trpE | trpEDCFBA | 2376801..2376920 | ND | GTCCCTCAGGATCAGATCAGACATGTATATTTA GAAAAAGTTGTCGTATTGAGGCCCGATTTATCATTGACAAAAAAT--A CTGAATTGTAATACGATAAGAACAGCTTAGAAATACACAAG |
S1 | Shimotsu H,et al. | 1984 |
trxA | trxA | 2912417..2912473 | AAAATAGCGTGAACGAATGGGAGATGCTATACTAAAAATCAT CATTTCACATTGGAG |
PE,2D-gel | Scharf C, et al. | 1998 | |
tyrS | ND | 3037193..3037312 | ND | GCTGAAGGCATGGGAGCTTAATCTGCCGGCTGGA GATCTGTCAACAATGGAGGATTAAAAGGCGGCGTTGACACAGGAT--- TTTATTTATGTTAAAAATGATATAGCTTCATATGAAAAGGT |
PE | Henkin TM,et al. | 1992 |
ureA | ureABC | 3768962..3769007 | -39:+6 | TTCTTTGAATTAATAGGCCTCTTCTATATAATGATGACATAA GTTG |
PE, beta-gal | Wray LV Jr, et al. | 1997 |
valS | valS-folC | 2868837..2868887 | -43:+8 | AGATGATTGACGAATCAAAAACACTTTTACTATAATAAAGAACA TAAATAA |
PE,Northan blot | Luo D, et al. | 1997 |
veg | ND | 52644..52763 | -102:+18 | CATAGAATTTTGTCAAAATAATTTTATTGACAAC GTCTTATTAACGTTGATATAATTTAAATTTTATTTGACAAAAATG--- GGCTCGTGTTGTACAATAAATGTAGTGAGGTGGATGCAATG |
RO | Whipple FW,et al. | 1992 |
wapA | 4029598..4029641 | -40:+4 | AAATATTGTAATGATATTTCAGTCTAGTTAAGATTATTGAGTAA |
PE,beta-gal | Dartois V, et al. | 1998 | |
xpt | xpt-pbuX | 2319403..2319447 | -40:+5 | CAGCCTATGCAAGAGATTAGAATCTTGATATAATTTATTACAAT A |
PE,HM | Christiansen LC, et al. | 1997 |
xsa | xsa | 2914307..2914353 | -38:+9 | GTCGTTGACATGTACGAACATATATAATATGGTTACTTTAAAAG CGC |
beta-gal,PE | Raposo MP, et al. | 2004 |
xylA | xylA-xylB | -47:+17 | CTAAAAAAAATATTGAAAATACTGACGAGGTTATATAAGATGAAAA TAAGTTAGTTTGTTTA |
S1 | Hastrup S. Genetics and biotechnology of Bacilli, vol.2 p.79- | 1988 | |
xylR | xylR | 1886186..1886256 | ND | AACTTTCTGAAAAAGATGTTGAAAAAGTCG--- AAAGGATTTTATAATATTAAGTCAAGTTAGTTTGTTTGATC |
Other | Kreuzer P,et al. | 1989 |
xynP | xynP-xynB | -64:-11 | CATTCTGTTTAAACTTTCTGAAAAAGATGTTGAAAAAGTCGAAAGGAT TTTATAATATTAAGTCAAGTTAGTTTG |
S1 | Hastrup S. Genetics and biotechnology of Bacilli, vol.2 p.79- | 1988 | |
yaaA | yaaA-recF-yaaB-gyrB | 3139..3190 | ND | CCCTTTCCCTAATTCGTTTTTTTTTAGTACAATTAGATATTAGTGA TATTTG |
S1 | Ogasawara N,et al. | 1985 |
yaaB | yaaB-gyrB | 3599..3668 | ND | TCAAATGACAAAGAACTTATACGGTGGGACAAAGACTATGCTAAAATA GAGGGAAGAGTGATGAAGCAAA |
S1 | Ogasawara N,et al. | 1985 |
ybbB | ND | 185041..185089 | ND | GCTTTATATAGGAAAACTTTCATTTATTTGGTACAATTTTTATTGA AAA |
HM | Baichoo, N., et al. | 2002 |
yccC | 290400..290445 | -40:+6 | GATCTTTTGACTGAATAGATAAAATGTACAATGATTAATCATCA TA |
PE,HM | Sun D, et al. Fisher SH, et al. |
1993 2002 |
|
ycdH | ycdH-ycdI-yceA | 307781..307857 | -43:+34 | ATTTATTCTTGCAAAACGTAATGACTTCGGTTTATTATGATATA GGATTACAAAATCGTTATCATTTTGATTTAAAG |
PE | Gaballa A, et al. | 2002 |
yciA | yciA-yciB | 363737..363801 | -40:+25 | TTTCTCTTGATTTTCAACAGTGAACCGATCAAAATAAATAGTAA TTATTACGATTTGTTAGTGAG |
PE | Gaballa A, et al. | 2002 |
yciC | yciC | 365318..365389 | -43:+29 | AAAACCGTTGACAAAAAGGAAAAAAGACCATACAATTTAAGTCG TAACAATTACGTTTTATGATAAATGGCT |
PE | Gaballa A, et al. | 2002 |
yczA | yczA-ycbK | 276749..276793 | -40:+5 | AGAATTGACTTCGTTTCATGAACCGAGTATTATAAACTCTACAA A |
ND | Sarsero JP, et al. | 2000 |
yfmP | yfmP-yfmO | 811412..811457 | -41:+5 | TTAACGTTTACGTTAAGGTTCAAAAGGTGTATAATGGTAACAGA AA |
PE | Gaballa A, et al. | 2002 |
yhaG | 1074533..1074593 | -42:+19 | AAAGTCTGGCTATGCAAACCGTCCGTTTGGTATACTGTTTGCAT AACACATTCTGTAAAGC |
PE | Sarsero JP, et al. | 2000 | |
yjcI | yjcI-yjcJ | 1257554..1257600 | -40:+7 | AAGTGTTGAAATAAACTGTGAATTGCGCTAATATAAAACAATCA GAA |
PE | Auger S, et al. | 2002 |
yjmA | yjmABCDEFGHIJ(No experimantal validation) | 1299668..1299715 | -39:+9 | GAGATTGATCCCAAAGGAATATAAAGGTAAAATAAAAACAAATC AAAA |
PE | Mekjian KR et al. | 1999 |
yklA | yklA | 1380207..1380262 | -50:+6 | TTTATACGCGAAAAATTGACATTTCAAATTTAATTGTGTACAATTTAATT GTATAA |
PE,HM | Volker U, et al. | 1998 |
ykoL | ykoL | 1397422..1397465 | -39:+5 | ATTCATACCACGTTCATTTAAAAAGAGTATCTTTTGTATAGGAT |
Northern blat, PE | Pragai Z, et al. | 2004 |
ykuN | ND | 1486259..1486302 | -1:-44 | ATTTATCTGTTGACAATGAAAATCATTATCATTTAAAGTGATAC |
HM | Baichoo, N., et al. | 2002 |
ykvW | 1450534..1450577 | -38:+6 | ATAATTGAAATTCTCTTCGTGCGTGCTATAATAAAGGAAGACAT |
PE,HB | Gaballa A, et al. | 2002 | |
ylxM | ND | 1670988..1671107 | ND | CGGAATAAATTGGATGATATTTAGCGTATTTTGGAAAAGTTAATCGCCGC TTTGACAAGATAAAAACTTGACAGTGTCA---TTAAAACCGTGTAAA CTAAGTTATCGTAAAGGGATTTGACT |
PE | Honda K,et al. | 1993 |
yneI | yneI-yneJ | 1923164..1923210 | -42:+5 | TCGTACTACTACTAATCCTTTTGTTTTTGGTACAATAAGACTATTA T |
Northern blat, PE | Schiott T, et al. Schiott T, et al. |
1997 2000 |
yneJ | yneJ | 1923614..1923660 | -42:+5 | TCAAAATGGTTTTTTTTATTGTTTTGGAGTATAGTATATAGTATCA A |
Northern blat, PE | Schiott T, et al. Schiott T, et al. |
1997 2000 |
ypuE | ypuE-ribD-ribE-ribA-ribH-ribT | 2430822..2430873 | -43:+9 | TATTTCATTGCGTACTTTAAAAAGGATCGCTATAATAACCAATA AGGACAAA |
Northan blot, S1 mapping Northan blot |
Mironov VN, et al. Perkins JP, et al. |
1994 1999 |
yqxD | yqxD-dnaG-sigA | 2603255..2603301 | -42:+5 | AACAATAGCATCTTTGTGAAGTTTGTATTATAATAAAAAATTGT GAT |
S1 | Wang LF,et al. | 1987 |
yqxD | yqxD-dnaG-sigA | 2603283..2603328 | -42:+4 | TGGCTGTGCCAAAAGGGAATAATGAAAAACAATAGCATCTTTGT GA |
S1 | Wang LF,et al. | 1987 |
ytkD | 3134535..3134579 | -40:+5 | AAAGGCTTCCGAAGAAACGTAACTGTGGTATGATGTATGGAAGA T |
PE,Northan blot,RT-PCR | Ramirez MI, et al. | 2004 | |
ytrA | ytrABCDEF | 3118527..3118573 | -41:+6 | AAAGGATTGACTTTGTGAGTCAAAGTATTTATTGTATTAAGTGT ACT |
Northern blat, PE | Yoshida K, et al. | 2000 |
yuiI | ND | 3292452..3292491 | ND | AAGTTGACTTTCTTTGGAAGAAAACCTATTATTTGAGGTG |
HM | Baichoo, N., et al. | 2002 |
yuxH | ND | 3258327..3258449 | -106:+17 | TAAAGAAAAACTGGCCTTTCATTCGCGAAGGGCCAGTTTTCTTTATGTAT ATATTATTTTTCATGTTTAGACAATTTTCGTCAAATTATTTGATA TACTTAGGGGTGAAAGCCGCGCGTATTG |
PE | Weinrauch Y,et al. | 1989 |
yvgR | 3433226..3433270 | -40:+5 | TATATTTTACTTAAGCCTAGTATTCCGGTAAAGTTCAATTAGAT G |
PE | Guillouard, I., et al. | 2002 | |
ywbI | ywbI-thiM-thiE | 3932165..3932213 | -40:+9 | TACTTATTGTACATAAGGTCTCTCTATAGGTAAAATATATATTA AGAAT |
PE,Northan blot | Zhang Y, et al. | 1997 |
ywfK | 3864273..3864315 | -39:+4 | CCTTCTTTACCAAGACGGATGATATGAGTACAATAAAGAAAAC |
PE | Guillouard, I., et al. | 2002 |