Transcription factor: SigA

Factor type
SWISS-PROT P06224
SubtiList BG10314
Consensus seq.
Comment RNA polymerase major Sigma-43 factor (Sigma A)
essential gene
Link toPhylogenetic profile , Weight matrix & Motif alignment

Regulated
gene
Operon Absolute position Location Binding seq.(cis-element) Exp. Reference Year
abnA abnA 2949207..2949261 -48:+7 CTATTTTTTTGTCTGTACAAATTACAGCATAGTGACTACAATAAAG
GGGATACCG
beta-gal,PE Raposo MP, et al. 2004
abrB ND 45188..45307 ND TTCGGTAGTTTCCAAGACATTACTGACTATAAGA
ACTAATTCTTACAATCAATAGTAAACAAAATGATTGACGATTATT---
GGAAACCTTGTTATGCTATGAAGGTAAGGATTTTGTCGAAT
PE Perego M, et al. 1988
acsA ND 3038986..3039105 ND AAAATACATGCCTTCTTTAAGAATACCAAATTAT
AAAGCGTTTTCAACATGGTTTATATTTTAAAAATTGAGAAGAATA---
TGAATATATACTATAATAATTGTGACAACTTCAGCAAAGGG
PE Grundy FJ, et al. 1994
acuA acuA-acuB-acuC 3038992..3039110 ND GCTGAAGTTGTCACAATTATTATAGTATATATTC
ATATTCTTCTCAATTTTTAAAATATAAACCATGTTGAAAACGCTT---
-TATAATTTGGTATTCTTAAAGAAGGCATGTATTTTTGATA
PE Grundy FJ, et al. 1994
adaA adaA-adaB 203492..203611 ND TTGAAATTAGTTTATCACATAATCATCTTTACTC
ATTTTGTTATCTTGCTATTACATTCTAACCACCTTATTTTTTTCT---
ATTTATGAGGTTATAGTGTAGTTATCAAGAATGCTAAACGG
PE Morohoshi F,et al. 1993
addB addB-addA 1135497..1135616 ND GGGAGAGATGTGCGGAGATAATCAGCTTTTTATA
TGTGAAAAGGCCGTTTTTACCAATAGATCAGATTGGTCATTTTCG---
TCAACATTCGATAAAATATAGAGAGATAAAAAGAGAGGGGT
PE Haijema BJ, et al. 1995
ahpC ahpC-ahpF 4117869..4117915 -41:+6 TATGGCTTGACAAAAAATATATATTAATTAATAATTCATATATA
ATT
PE,HM Antelmann H, et al. 1996
ald ND 3277221..3277340 ND AAACCTTCCGGCACATGGATTTGTGAAATTTCAC
AAATCCATGTTTTTTTATTTTCTTAATCAAACAAAGAATTTTCCA---
AAATATCAAGCTACACTAAAAATATCACATATACAGGAGGA
PE Siranosian KJ,et al. 1993
alkA ND 203476..203594 ND TAACTACACTATAACCTCATAAATAGAAAAAAAT
AAGGTGGTTAGAATGTAATAGCAAGATAACAAAATGAGTAAAGAT---
-GATTATGTGATAAACTAATTTCAACCAGCGTGAGTTTTCT
PE Morohoshi F,et al. 1993
alsS alsS-alsD 3710404..3710524 ND TCAATATGCATTCCTTTCCATAGGTTAATAATTC
GTATTACATATTAATCATAAGGCGAATCGATATTGGAGGTCAATT--T
CCAAAGAGTGTATAGTGAAACTTATCACAAGATATTTAAA
PE Renna MC, et al. 1993
amhX amhX 324801..324859 -42:+17 TTAATTATTCTGAATAGTAGCAATATGTGCTATATTATATACAG
CCTATCTTCCTGTTT
PE Kempf B, et al. 1996
amyE ND 326945..327064 ND AGGGAAGCGTTCACAGTTTCGGGCAGCTTTTTTT
ATAGGAACATTGATTTGTATTCACTCTGCCAAGTTGTTTTGATAG---
AGTGATTGTGATAATTTTAAATGTAAGCGTTAACAAAATTC
S1 Nicholson WL,et al. 1987
ansA ansA-ansB 2456045..2456164 ND TTTTTCACCTTGAGCTGATTATATCATATAGGTA
TTAGGAAGTGTACGCGAATTGAATAATAATGTCTTGCGTATTTTA---
TTTTCCGTGTCTATAATTGCATTAAAAGTATGCGAAAAGCG
PE Sun DX,et al. 1991
aprE ND 1104913..1105034 ND GAGTCTCTACGGAAATAGCGAGAGATGATATACC
TAAATAGAGATAAAATCATCTCAAAAAAATGGGTCTACTAAAATA-TT
ATTCCATCTATTACAATAAATTCACAGAATAGTCTTTTAAG
PE Henner DJ, et al. 1988
araA araA-araB-araD-araL-araM-araN-araP-araQ-abfA 2948043..2948088 -40:+6 AAAGATTGACAGTATAATAGTCAATTACTATAATAAAATTGTTC
GT
PE,HM Sa-Nogueira I, et al. 1997
araE
3484596..3484639 -39:+5 AACATTGACAGAAAATGCAAACAAGATTATTCTATATTTGTACG
PE Sa-Nogueira I, et al. 1997
araR
3484634..3484679 -40:+6 AATGTTTTCTTACAAAGAACGCTGTGATATACTGAAATTTGTCC
GT
PE Sa-Nogueira I, et al.
1997
argC ND 1194204..1194322 ND ATTTTTTTTGAGCGGAATTCCCATTGAACAGAAA
ATTTATAAATGAATAAAAATATTAAATATACGATTGAATTAATTT---
-TTATTCATGTTATAATGTTAAATAATTTCACAAAGACCAA
PE O'Reilly M,et al. 1994
arsR arsR-yqcK-arsB-arsC 2656889..2656932 -39:+5 TGCTTGCATTATTTTAAAAATCATGAGTATAATAAATACATCAA
PE,HM Sato T, et al. 1998
asd asd-dapG-dapA 1745127..1745245 ND TCTAGTTGAGAATTATCAGGGAAATGACTAAATT
TACAGAAAATCTTTCCCAAACTAAAAAATTCGGTCATCACCCGCA---
-TATTCTATGGTAAAATAAAACGTAAAATCATAGTCAAATC
PE Chen NY,et al. 1993
bglC ND 1939679..1939798 ND CTTATTCATTGGAGGTAGAGCAAATTGACAGGCT
TTTAAACCTCCCCAAAACAAGAAATTAGGTTGATAGACAATCATG---
AGAAAGATTTTTACAATGAGTTCGTGCTCATAAGAAGTGTA
S1 Robson LM,et al. 1987
bglP
4034828..4034874
AAGCGTTGACATCTCACGAATCTAGTGCTAAAGTATACCTACAA
ACA
PE Le Coq D, Lindner C, et al. 1995
bsrB
2095317..2095365 -43:+6 CTGACCTCTTGATTAAAAGCGCCTGATGGTGTACTATATTAAAG
AAGCT
Northern blat Ando Y., et al. 2002
ccdA ccdA-yneI-yneJ 1922295..1922343 -44:+5 TCAAATGAGAAGGAGTATAATGTCTCAATGTCAAATTAAATTATA
TAAG
Northern blat, PE Schiott T, et al.
Schiott T, et al.
1997
2000
ccpC
1485275..1485350 -44:+32 GGGCTTGAATAAGAAACTAAGATTTTATTAGAATGGGAGATAAGA
AAAACTTATTGATAACAAAAAGGAGGACGAC
PE Kim, H. J., et al. 2002
cdd ND 2610592..2610711 ND TTATTTTTTTGCCAAAGCTGTAATGGCTGAAAAT
TCTTACATTTATTTTACATTTTTAGAAATGGGCGTGAAAAAAAGC---
GCGCGATTATGTAAAATATAAAGTGATAGCGGTACCATTAT
S1 Wang LF, et al.
Song BH,et al.
1984
1989
cggR
3482888..3482943 -42:+14 CTTAACAGTTGAATAAACAATTCCACCCTGTTAAAATAATTAAA
GAAAGCAGAAAT
PE Ludwig H, et al. 2001
citA ND 1020238..1020357 ND GAAGCCATTTGAAATCCATTTCTATTCTCCCTCT
GATTAATATTTTTAATTAATTCCCTTTAAAATATTGATTATTTTT---
TAAATATTATATTTACTATAATAACAGAAAAGGATAGGGGG
PE Jin S, et al. 1994
citB aconitase 1925719..1925838 -102:+18 ACAGTAAAAATTACCGGTACATTTTTCTCATAA
GTCGAACTTATTGTATTTAATAAAAACATTGATATTTACTTATGT--A
TGATTTTGTTTTAATATGAAATTGTGAGAAAATTGTGATGG
RO
RO
Fouet A, et al.
Whipple FW,et al.
1990
1992
citR ND 1020291..1020410 ND TGGATGTTTCTACACATGTAATTCCCTTTAATCC
GTAATGTACCATTTGTATTCCCCCTATCCTTTTCTGTTATTATAG---
TAAATATAATATTTAAAAAATAATCAATATTTTAAAGGGAA
PE Jin S, et al. 1994
citZ ND 2981485..2981604 ND AACCCGCAAATAAAGGCGTTTTTTCGGGGAAATC
ACAGAATGGAAAAAAAAAATTATAGGTAAACATTTAACAAATGTC---
TGATTATTGTTTATAATGAGAATAGGCTTAAACTTAAATAA
PE Jin S, et al. 1994
clpE
1437231..1437274 -39:+5 AGACTTGAAAGTCAAAGATAGTCAGAGTATACTATTAATCAAAG
PE Derre I, et al. 1999
clpE
1437112..1437154 -38:+5 TGGTTTGAATGCCGTTAAGTTTGCCGTATACTAATAGTCAAAG
PE Derre I, et al. 1999
clpP clpP 3545111..3545180
ATCTGACATACGATGGTTTGAACCCCTGTATTTTTGGGGAAAATGG
GAAAAAGAGACGACTTTGCATATC
PE,HM Gerth U., et al. 1998
clpX clpX 2885184..2885233 -46:+4 AACACATTGTTACCGTCTTTTTGGAAAGTATGGTAAAATGCAATAC
ATAC
PE Gerth U., et al. 1998
codV codY-codW-codX-codY 1686420..1686468 -43:+6 GTATTGATTGCAACCTGAGCGCGATTTGTGATACCATTTAAAAG
CCCTT
PE Slack FJ, et al. 1995
comA ND 3252500..3252618 ND AAGTGAAGGAAAGGGCTTTAAGGCTGATATTGAA
ATCGAATTGTAATGGATTTATAACGGAAACGACTTGGCACAGGCC---
-AAGTCTTTTTTATAAAATGGAAAAGAGTGAGTAAAAGGGA
S1 Weinrauch Y,et al. 1989
comC ND 2864411..2864532 ND TCCGGCTCCGGCAGAATCAAAAAAAGATTCTGCC
GTTTTTTTCATGTGTAAAATTGAATATTCCCAATTGGAGCTCAGG-AT
GTCCATTTTGCTACAATCCATACCAGAACTCAATGAGTAAA
PE Mohan S,et al. 1990
comEA comEA 2641238..2641357 ND CAAGGCGCAGAAATCAAAAACCATCGTTTCCTAA
AACGATGGTTTTTTAAAATGCTTTTTTATGCTTTTGCAGTACAGA---
CGAACGTATGACATACTCGTCTACACATGAAACTGCTTTTT
PE Hahn J, et al. 1993
comFA comFA-comFB-comFC 3642587..3642706 ND GTGTTTTAAATAAGGCCAAATCTCCGTTTTTAGA
GCGGAGATTTTTTTATATTCTTATTTTAATAGTTGGACAGAAAAT---
ATTCATTCAGGCATACTGTTTCGAAAGGAGGCGTGCTATGT
PE Londono-Vallejo JA, et al. 1993
comGA ND 2559313..2559432 ND CTTTTTTCTTGCCAGAAAGAATTGGTTTTTCAGC
ATATAACATCTCACAAAATCACGTTTTCCCTGTTTGATTACCTTT---
TCTTCTTTTTCTACAATATGCGTTGAAAGGAGAGGGAATCA
PE Albano M, et al. 1989
comK ND 1116276..1116396 ND TATTACTAGTCATTTAGTACCATTAAATATCATT
AAAAGATGATTTTATCTTAAATGTTAAAAAAACCTGTCGTTTTAC--A
AAAACAGATGATAGATTATTAGTATAAATTTTGCAGAAAAA
PE van Sinderen D,et al. 1994
comQ ND 3255994..3256113 ND TTTTTTCGTTCTACCGATACAATAAATGGATAAA
GTATTATATGATTGTTAAAAAACGAAAAACCTGCTGTCCTTTAAA--T
GTCCCATTTAGTAAAATGGAATGGGAGGGGGGAAGTCGTT
PE Weinrauch Y,et al. 1991
cspB ND 983904..984022 ND TTCCGTAAATAAATATCAAATTGAAAAATAAATA
TGGTATTTTCCGAAAAAAATTTCAATAAGCAGTTGTTTTTTCTG---A
AGATTACTGGTAGAGTAAAGGTAATTATTTTTGTTCGAAC
PE Willimsky G,et al. 1992
ctaA ND 1558269..1558388 ND TCCAGAAGCCGTCATTCTATTATATTTTTGTGAA
CAAAAGGCTCTGGGAATTGCCACAAAACACATATTCGCTTACACT---
TGGAACGTATATAAAATTGCAGCAGTATGTTAAGAAGGTGA
S1 Mueller JP,et al. 1989
ctsR ctsR-yacH-yacI-clpC-radA-yacK 101363..101414 ND CGAGAAAGTTGAAAATTCTCGAGAAACGGCTTATAGTAAGATTA
AAGTCAAA
Northern blat, PE Kruger E, et al. 1996
cysH cysH-cysP-ylnB-ylnC-ylnD-ylnE-ylnF 1629364..1629418 -39:+16 AGTCGGGTTGACTTATGTTAGAATTGTGCTAAAATTTACTACAA
ATCTAAAAACT
Northan blot Mansilla MC, et al. 2000
cysK
81687..81735 -41:+8 AAGTGATTGACAAAAAATTTTGAAATTGATAGATTATATACATA
ATACC
PE Van der Ploeg JR, et al. 2001
degQ ND 3256332..3256451 ND ATTCCTTTGAGTATAAGGACCTATTGAGATTTGC
GGTGTCACGCAGGACTTTTTTGCATACTTTTCGGTGAAAAATGAG---
CCGAAAGCAGACACACTATTAGTAACAGATCAAATACCTAG
S1 Yang M,et al. 1986
degS ND 3645673..3645792 ND TGTGCAGCATGCTAGCTGACCCTCCTGCTAAGCA
TAAAAGACTGCCTATACAAATTCGTACAGTCTTTAGAATTTTTGT---
GCGTATTTTGGTATCATAAAGAGTAGATAGTATATAAAAAT
PE Msadek T,et al. 1990
des yocE 2088536..2088583 -43:+5 GTGTGCTACTACAAAAGACTTCTCTCATTAGCGTATACTGAACCGAGA
PE,HM Cutting S, et al. 1989
dhbA ND 3291430..3291469 -1:-40 ATATTTGACTGTCACATGACATTTGGATATGATTATTTTT
HM Baichoo, N., et al. 2002
divIB ND 1592813..1592932 ND GTGAAAAATACGAGATTGATATGCACACAGAGGT
TGAAATCATCGGCGGAAATCGCTGATTCAAGTTCTGACTGAAGCT---
-GTTCATATGACATACTGTAAGCAAACGAACAAACGGCATCA
PE Harry EJ,et al. 1994
dnaA dnaA-dnaN 55..174 ND TACCAACCCCTGTGGACAAGGTTTTTTCAACAGG
TTGTCCGCTTTGTGGATAAGATTGTGACAACCATTGCAAGCTCTC---
GTTTATTTTGGTATTATATTTGTGTTTTAACTCTTGATTAC
S1
S1
Ogasawara N, et al.
Moriya S,et al.
1995
1988
dnaJ dnaJ-yqeT-yqeU-yqeV 2625156..2625208 ND AAAGGAATTGAAAAATCATAATTCAAAATGATACAATCTAATTTAT
GTGAGAA
Northan blot Homuth G, et al. 1997
dppA ND 1359571..1359690 ND CAAACATGAATCCTTGAAAGAGGATTCTTTTTTT
ATCACTGAATGATTGAGATTTTTCCCAGTTATATTGCATTTTTCC---
TCTTTTTTTAATATAATTTGTTAGAATATTCATAATTTAGT
PE Slack FJ, et al. 1991
drm drm-punA 2447656..2447714 -42:+17 AATACATTGTCAACGGGAATGAAAACGGTTTATACTTGAGTTGT
CAGACCTCTTAGCGA
PE Schuch R, et al. 1999
drm drm-punA 2447638..2447684 -41:+6 TATACTTGAGTTGTCAGACCTCTTAGCGATACAATAGACGTATA
GAA
PE Schuch R, et al. 1999
fabL yfhR-sspE 935931..935978 -43:+5 ACCTGGTATGGAATATTTCAGTGTTTTTCGGTAAAGTAAAACAAG
TGT
Northern blat, PE Yamamoto H, et al. 1999
fabL yfhR-sspE 936203..936247 -39:+6 TTGATTGGCCTTCTTCGTTCAAATAAGGCATAATTTGCTGAAAG
G
Northern blat, PE Yamamoto H, et al. 1999
fbp fbp 4127002..4127044 -46:+5 GTTTTAATTGTCTCTAAAAGCAGTTATGCGGTACTATCATATAAAG
GTCCA
PE Fujita Y,et al. 1998
feuA ND 183352..183404 ND GGAATTTGTCCATGGTGTTATATCTGTTCATTCTCTATAATTCCAA
TTGATAA
HM Baichoo, N., et al. 2002
fhuD ND 3417411..3417467 ND AAAAATATCGTGTCAACCGGCACTTGCAGTGGTATAATCACAGATG
ATAATGATTCT
HM Baichoo, N., et al. 2002
flgB fla/che operon 1690470..1690516 -1:-42 CGAACTTCATAGACTTTATGCCTGTTATTTCTTACAATAAGCATA
TA
PE, DP, Western blot West, J. T., et al. 2000
ftsA ND 1595643..1595762 -102:+18 AAATGTGAAAAGCACATAAAAATATTCTGTTGTT
ATTTTTTGTTACACACTTGTAAAGCCACATTCATTGTATTGTTGT---
TCCGCAAATAATAGAATAGAAATGATCGAAATGTGAGGAGG
PE
lacZ assay
Gonzy-Treboul G,et al.
Fukuchi K, et al.
1992
2000
ftsA ND 1595384..1595503 -102:+18 GTACATATGATGAAATGGTATTTGTTTCCGGTTT
CTTTTTTAATATTATATTGGCAATAAGTTTAGCTTTTCTGGGAGT---
CCATCTTGGTGTAGACTTGTATTTAGCAGGTATATTCGCAT
PE
lacZ assay
Gonzy-Treboul G,et al.
Fukuchi K, et al.
1992
2000
ftsH
76910..76959 -42:+8 ATTGTTTGTATTGGAATGATTTTCTATGGTACTATTGAACATAG
TTGTG
PE Deuerling E, et al. 1995
fur
2449497..2449544 -39:+9 TATAGTTGGAACTCTGCGCGTATTTTGTTATAATGAGTCATG
GAATGC
PE,HM Fuangthong M, et al. 2002
gabP
686148..686196 -40:+9 AATTTTCGACAAACTGTATATTTATGATAGAGTTTCAATTATCA
TAATA
PE,HM Ferson AE, et al. 1996
gabP
686137..686186 -42:+8 AAACTGTATATTTATGATAGAGTTTCAATTATCATAATATTCAG
TAATGA
PE,HM Ferson AE, et al. 1996
gabR gabR 441073..441123 -45:+6 TCGGTATTTTCTTATCATTCTGACTTCTCTTTGGTATGATGAAAA
G
TACCA
PE Belitsky, B. R., et al. 2002
gabT gabT-gabD 441072..441128 -40:+17 TTGGTACTTTTCATCATACCAAAGAGAAGTCAGAATGATAAGAA
AATACCGACAGGG
PE Belitsky, B. R., et al. 2002
galE
3990006..3990054 -41:+8 AAATGGATGTGGACCGGTTCTAAACACTATATAATGAAAACAGG
TCATT
PE Krispin O, et al. 1998
gcaD gcaD-prs-ctc 56219..56338 ND TTTTTAATTCTGATTTTTCAAACTTAGTTGCACT
CAATAGAAAATTCTTGCACTTCATGAAGTCTCCTTGAAATCAGAA---
GATATTTAGGATATATTTTTCTATGGATAAAAGGGATATTG
RO
beta-gal
Whipple FW,et al.
Hilden I., et al.
1992
glnR glnRA operon 1877028..1877147 ND AAAAGCAATTAATTTAAATTTTTTAAAAATTTCTCCTGGATTTGATGTTA
AGAATCCTTACATCGTATTGACACATAAT---ATAACATCACCTATA
AT
GAAACTAAGTTAAGAAAAGGAGGA
RO Strauch MA,et al. 1988
glpD ND 1004092..1004210 ND ATTGGAAGAAGAAAAACGAAATGAGCTGTATAAA
GGCTGGCAAAAAGCCGTGAAAGCAGCTATGGCTTTTAAATAAAGT---
-AATACTATGGTATAATGGTTACAAGTTAATAAGAACGGTC
PE Holmberg C,et al. 1991
glpF ND 1001585..1001704 ND CTGTAGCTGTCACAACATCTAATACCAAATTGTG
GAAAAAATATGAAAACTTTTTGACGGAAAGTGATTGACACCGCTT---
TCATGCACTGATACAATTGCACTAGGTTAATACATTGTGAT
PE Holmberg C,et al. 1990
glpQ glpQ 233917..233992 -1:-76 AGCATGTTTAAGAAAGACACATAAAAGATTAATAGTTTTCCAACACGC
CGTTTACATCCGTTTTTTATTATGAAAG
Northern blat, PE Antelmann, H., et al. 2000
glpT glpT-glpQ (glp operon) 235454..235571 ND AAAATATAATTGCATTTAGTAAAAGGATAATATT
CACTTCCCTAAGGCCCAATTTGAAAATTACCCGTTTACATTCGCT---
CCGGACTATGATAATTTAAGAAAGCGCTATCATGATAAG
S1 Nilsson RP,et al. 1994
gltA glutamate synthase operon 2013881..2014000 -103:+8 GCGCACGTCCATGTTTGTCTCACATCCATCTATC
TCATTTTGAGATTCTTTTGATCTAAATTATATATTGTTTATATCG---
TTTTGAAAACCTACAATGATTATAGAGTTGTTAGATTTTAT
S1 Bohannon DE,et al. 1989
gltC glutamate synthase operon 2013846..2013965 ND TCCTCTCCCCCGATCAATTTCCGATAATACCGGT
CATAAAATCTAACAACTCTATAATCATTGTAGGTTTTCAAAACGA---
TATAAACAATATATAATTTAGATCAAAAGAATCTCAAAATG
S1 Bohannon DE,et al. 1989
gltX ND 110893..111010 ND ATTTACAGGCCGGGCGGAAGGAATAGCGGCTCAG
GCGACAGTACTGATACAAAAAGGCTAACTTGTTTTGATGCCGGGT---
CTATTTGGTGGTAGAATAGATTCATACATTTTTGCCTGA
S1 Gagnon Y,et al. 1994
glyA
3789499..3789544 -41:+5 ATCTTTTACATCGGCCTTAAAAACCATGTACAATAGTGATGGTA
AA
PE Saxild HH, et al. 2001
gntR gntRKPZ 4112302..4112422 -105:+16 TAATTGATCTGGAAATACATACCATGCAATATGGTAAAAATTTAAATAAA
AATTAGAAATGAAAGTGTTTGCATAAAAGAAATATTCACGTTATCAT
ACTTGTATACAAGTATACTCCTTG
S1 Fujita Y,et al. 1986
gntZ gntZ 4116036..4116103 -42:+26 CGTTGCTGGACTGGGATTCATTTTATTGTTAAGTTTAGTTGTAT
GAAATTAAGAAGGAGCTGTAACAC
S1 Fujita Y,et al. 1986
groES groES-groEL 649282..649401 ND GAAAAAGCTAACGGAAAAGGGAGCGGAAAAGAAT
GATGTAAGCGTGAAAAATTTTTTATCTTATCACTTGAAATTGGAA---
GGGAGATTCTTTATTATAAGAATTGTGTTAGCACTCTTTAG
PE Li M,et al. 1992
gsiB ND 493935..494054 ND GAAAGCAGACGGACACCGCGATCCGCCTGCTTTT
TTTAGTGGAAACATACCCAATGTGTTTTGTTTGTTTAAAAGAATT---
GTGAGCGGGAATACAACAACCAACACCAATTAAAGGAGGAA
PE Mueller JP, et al. 1992
gtaB gtaB 3664539..3664585 -41:+6 AAAGCTTGTTTAAAAATGGTTTATCCGATATCATAAAAATGTGT
AAA
PE Varon D, et al. 1993
guaA ND 691857..691976 ND AAGATTCTTCGGCGCTATGGAATGATTCGAGAGA
GTTATGGGAAAATTTAATTAAAAGAAGATGGTCTTGACCGCTTAT---
CGACGTGTTGTTAGAATTAGTGAATATTATCGGAGTCTGGG
PE Mantsala P,et al. 1992
guaD guaD 1382470..1382518 -41:+8 TTAAGAATGTTCTTTGCATTCTTTTCGGCTATACTAATAACACT
CTATT
PE,HM
PE,HM
Nygaard P, et al.
Beier L, et al.
2000
2002
gutB glucitol dehydrogenase 666850..666967 ND AGCGTTTTTTGTATATGAAAAAATAAAAGTACAG
TGCCGCTGTCCTTTTATACAGCAGGAAAGGCTGTTGAACGTGTTA---
--AAAAGCAGATAAAATGGGGGCAGTAACAGAGAAAACAAA
PE Ye R,et al. 1994
gyrA gyrA 6814..6933 ND AGGCTTTTTTCTGAACAAGATCAGATGCAGCGA
TGCCTGCAATACCTATATATTCTAGCAATTTAATGTGTATAATCA--TAA
GTTTATTGATATAATGGAGAATAGTGAAATCGTATTGAA
S1 Ogasawara N,et al. 1985
hbs ND 2385182..2385239 ND AATGCTTGATATGGCTT---TTTATATGTGTTACTCTACATAC
A
GAAATTCTTCACTTTGT
PE Micka B,et al. 1991
hemA ND 2878247..2878369 ND ATTGTCAATAGGAATGCTTCTTTTCCCTGAAGCT
TTTTCTAATATAGCATAAGAATTTTAAAATCTGTTCACATTTTGTGAA
AGAAACTATGTTATAATTATTATAAATAATGAGTTCTATGT
PE Petricek M,et al. 1990
hemZ hemZ 1056918..1056963 -40:+6 CCGGATTGATTTTAGCAGTTTATTTCTGTACACTAAAGAAAGTT
TT
Northern blat Homuth G, et al. 1999
hrcA hrcA-grpE-dnaK
hrcA-grpE-dnaK-dnaJ-yqeT-yqeU-yqeV
2628888..2629007 -103:+18 TTATTTGACTCATCAAGGAAATTATTAGGCAATGAAGTTTTTGGCGCTTT
TTTTGGGTGAGTTATAATTGACATTTTTCTTGTGGTTTGATACTTT
TGTTATAGAATTAGCACTCGCTTA
PE
Northern blot
Wetzstein M, et al.
Homuth G, et al.
1992
1997
htpG htpG 4090362..4090407 -41:+5 ATCTAATTGACAATTGTCATCTTATGTGATAAATAGATGCTGAA
AA
Northern blat, PE Schulz A, et al.
Versteeg S, et al.
1997
2003
hutP ND 4040366..4040485 ND TGTTCTGCTTTCTGCGTCACGCTATTACAATAGC
AATCTAACTTGTTAAAGACTATAAAAAAACCTTTTGACTTCTGCT---
GCTGAACCAATTAATATAATACTCAGTTAATAGTTATCAGA
PE Wray LV Jr, et al. 1994
icd ND 2980091..2980210 ND CCGATTGAAGAAAGAGCCTAAAGAACCATTGGAG
GCTGGCTTGCGTCAATGAGGTTAGCCTCTTGTTCAGACATCAAAA---
TTGGGTTACACTTTAAATTGAATGTTAGGAAAAATCATTTT
PE Jin S, et al. 1994
ilvB ND 2896500..2896619 ND CAATAATGAAAGCGTATACAATATAGATTGATTA
ATCAAAATTGTCTAATAATTTTAAAAAATGCTGTTGACACTGCGT---
CCAAAGCGGCGTAATATGAGTTCAACAAAAGATAAATGCAA
PE Grandoni JA,et al. 1992
iolA iolA-iolB-iolC-iolD-iolE-iolF-iolG-iolH-iol-iolI-iolJ 4083586..4083632 -39:+8 ATGATTGACTTATGGGTATTATGCGATTAGAATATAACCAAGAA
ATG
PE Yoshida KI, et al. 1997
iolR iolR-iolS 4083750..4083793 -39:+5 CTATTGATTAACTTTTGGTTTTTATTATATATTTATGTTACGTA
PE Yoshida KI, et al. 1997
iolT ND 675661..675706 -41:+5 TTTATATTGACTGAAAGCGTTTTTATAATTATGATAATATCAGA
TA
Nothern blot, PE, FT Yoshida, K., et al. 2002
kdgR kdgR-kdgK-kdgA-kdgT 2324875..2324922 -43:+5 AAAAAACTCTTCCCAAATTTTAAAATTATGGTATTCTTTTGTTG
TAAC
PE Pujic P et al. 1998
kinC ND 1517511..1517632 ND TTACCGCCGCCTAAGATAAGACATCAAGATATTT
GGTAATGAATGATTTGGGATACTTTACATATTTTACTCAATTATT-TG
TCGAAGAATGGTACAATAAGTAGAGAAACACAAGCGGCAGG
PE LeDeaux JR,et al. 1995
lctE lctE-lctP 329230..329277 -44:+4 TCTCTTGCAAAAGTTTGTGAAGTGTTGCACAATATAAATGTGAAA
TAC
PE Cruz Ramos H, e al. 2000
licB licB-licC-licA-licH 3960937..3960982 -40:+6 CTGAGTGTTTATGAAAGCGATTTCATAATATGATGATAGCAACA
GC
PE, Northan blot Tobisch S, et al. 1997
licR licR 3963022..3963063 -38:+4 GTTCATTGACTTGCCATTCTCTCCATTATAGAATTTATATAC
PE, Northan blot Tobisch S, et al. 1997
lonA ND 2881937..2882055 ND TCAATAAAGAATCCGTTTAAACCCTATTTTGATA
ATAGGGTTTTTTTCATGAAGGACATCTTTTCCTTTTTCATATCAG---
-AAAGAAAGGGTATACTACGAGGAGACTGTTTTATAGAAAA
PE Riethdorf S,et al. 1994
lonA ND 2881865..2881984 ND CATATCAGAAAGAAAGGGTATACTACGAGGAGA
CTGTTTTATAGAAAATGGAACCATGCCGTTTATTGTACAAGGATG--A
AAAAGTTGTATTATAATGGTTCATACTAAAGTCACGGAGGT
PE Riethdorf S,et al. 1994
lrpC
475547..475611 -43:+12 GAACTGTACTTGTCATTTACAAAAATACCCGAGATAATGTGTAC
AAAATCAAAAAAGAAGGATGT
PE Beloin C, et al. 2000
lysC ND 2910130..2910249 ND GACATCAAAAAAGCCGGTGTTCCGCAGCGGCGGC
TCAGCTCCTTTACGACAAATTGCAAAAATAATGTTGTCCTTTTAA---
ATAAGATCTGATAAAATGTGAACTAATTTCATAGTTAGATC
PE Chen NY,et al. 1987
lytA lytA-lytB-lytC 3662154..3662199 -39:+7 AGTTTCATTGTTTCTTAATTTTTCTTTAAAATATAAAATAGGTT
GA
PE Lazarevic V, et al. 1992
lytR lytR 3662248..3662291 -43:+5 AGAGTTGTATTTATTGGAAATTTAACTCATAATGAAAGTAATTT
PE Lazarevic V, et al. 1992
maeN
3243747..3243798 -40:+12 TTAAAAAAATATGAAGTGTTAACGCTTTCTTGTAGACTGTAACAAA
CAATAC
PE Tanaka, K., et al. 2003
malA glvA-glvR-glvC 889289..889335 -41:+5 AACGTGTTACGGGACGAGCTATCTCATGGTATAAATGGAATTGT
AAA
PE,Northan blot,beta-gal Yamamoto, H., et al. 2001
mecA ND 1228225..1228344 ND TGTGACTGTTTTATCATAAAATAGAAATACAAAG
GAATTCACACTGGCCTTGGTTAAGGTTAAGATGTGGACGGAATGG---
GTAAAGTGTAGTAAAGTACAATTAATCGGGAGCTTAGATGT
PE Kong L,et al. 1993
med med-comZ 1205806..1205856 -40:+11 AGTGGAAAAGACAATTTTCATCAATTTTCGACAAATATTAAGAA
AAACCTT
PE,HM Ogura M, et al. 1997
med med-comZ 1205806..1205856 -46:+5 AGTGGAAAAGACAATTTTCATCAATTTTCGACAAATATTAAGAAAA
ACCTT
PE,HM Ogura M, et al. 1997
menB ND
ND TGGAGCAGCCGCGATTGGTTTGGTAAAATAGTG
AGTGAGTTTTGACAAGCATCTGACTCATTCACATAGAGAATAAAA---
GGAGGTCATCATATGGCTGAATGGAAAACAAAACGGACATA
PE Driscoll JR,et al. 1992
menE ND 3147838..3147956 ND TTCCGTGATCAGCAATATCTAGTAAACCAACAGC
TTGAGACTTTGCGGTCCAAGCTGTTTTCTTTTCAATACAGACATT---
-TTACCTCGGAGATGATGACATGCTGACAGAACAGCCCAAC
PE Driscoll JR,et al. 1992
menF menF-menD 3152843..3152906 ND
AAGCTTGTTTCTTTTTCATTTCTG---
-AAATTAGGTTTATAATAGGTAAGGCAGGCCATTTGGACTG
PE Qin X, et al. 1996
mtrA mtrA-mtrB 2384573..2384627 ND CATTCACTTTGCTTTTAGCGGGGCATATGTGCTAGAATCGAAATTA
AATGTATTC
HM, SDS-PAGE, bata-gal Gollnick P, et al. 1990
nadB ND 2848707..2848825 ND GGCGTTGTCGCTGCATAATCTAAATAAATCATCC
GGTCTTCCTCCATCCGTTCTCCATAAAAAACTCTTGAGTTTATTT---
TATCCTTGTGTAAATATAGGTGTCAAGACAGGTGTAAACA
PE Sun D,et al. 1993
nadE nadE 337721..337766 -43:+3 TCTCTTGTTCACAGTGAATGAAGACCTGTGCTATATTTAATAGG
GA
PE Antelmann H. et al. 1997
nasA nitrate assimilation gene 362353..362471 ND CTATTAAAAATTATGTCACAATGCATTGTTAACG
CATTAAACGTGTCACAAAAACTTACACATGTCTTTTCCAGAAAAT---
-AATGGTCCTATATCCTTGATTCAGAAAATGTAAAATAATG
PE Nakano MM, et al. 1995
nasB nitrate assimilation gene 362338..362458 ND TTTCTGAATCAAGGATATAGGACCATTATTTT
CTGGAAAAGACATGTGTAAGTTTTTGTGACACGTTTAATGCGTTAACA
ATGCATTGTGACATAATTTTTAATAGGAGAAAACTTACGAG
PE Nakano MM, et al. 1995
nfrA nfrA-ywcH 3911265..3911309 -41:+4 TTTCACTTTTGAGATCACTTTTTTTCGGATATGATAAAAAGTGA
T
PE Moch C, et al. 2000
nifS ND 2848655..2848774 ND CCCCTGAACCGATGACTGCAATCGTCTTTTTAG
ACATATGCCATCCTCCTGTTGTTTACACCTGTCTTGACACCTATA--T
TTACACAAGGATAAAATAAACTCAAGAGTTTTTTATGGAGA
PE Sun D,et al. 1993
nrgA nrgA-nrgB 3755687..3755784 ND TCGATAACATTT
CTCAAAAACCATGTCAGGAAATCTTACATGAAAATGTTTTATCAT---
TCTTTTTTCTCTATAATGAAGAAATATAATAATTGCTTTTT
PE Wray LV Jr, et al. 1994
nusA ND 1730790..1730908 ND AAAAAGTGCCATCGTAATATTAGAGTTTCTGTCA
CTTGCTTAGGTATGAAGGTAAGCGTATATCCATTTGCAATAAAAA---
TATGGTTATGGTATAGTTTTATTGGAAATGCTAACGATTA
PE Shazand K,et al. 1993
odhA ND 2110909..2111027 ND ATGCTTTTTGGCGTTTGTTTTTTCGAATGATTAA
ATTTTTTGTTTTTTATAAAGGTTTTTTACTATTTTGTGAACAATC---
-AAGGTAGAATCAAATTGCAAACAGTGGTAAAATATCGTTG
PE Resnekov O,et al. 1992
opuA opuAA-opuAB-opuAC 320461..320508 -43:+5 GATGTTTATAAAGAAATGGTACAGAATAAAAGAGAATATGCTGT
TTGT
PE Kemph B, et al. 1995
opuA opuAA-opuAB-opuAC 320495..320546 -47:+5 AATATGCTGTTTGTGTGGGAAGTTACATAAATGTTACGGTAATAAA
GATTGC
PE Kemph B, et al. 1995
opuB opuBA-opuBB-opuBC-opuBD 3462338..3462392 -42:+13 GTAAACTTTTTATTTTATAAACTTTATTCTATAATGGGAAGCAT
TCAATTGTCTG
PE Kappes RM, et al. 1999
opuE
727768..727810 -40:+3 CGCTTGAATGGCCGGGAATACTTTGTTAGGTTAAGTTACCAAG
PE Spiegelhalter F, et al. 1998
pabB pabB-pabA
pabB-pabA-pabC-sul-folB-folK-yazB-yacF
pabB-pabA-pabC-sul-folB-folK-yazB-yacF-lysS
82785..82834 -43:+7 GAAATTCACTTTTTTCACTAACAACATTGCTTTACAATTAAAAA
CAAGTA
GAAATTCACTTTTTTCACTAACAACATTGCTTTACAA
T
TAAAAACAAGTA
(Two possible sigA binding sit
es)
PE, beta-gal, Northan blot De Saizieu A, et al. 1997
pbpD ND 3232833..3232952 ND CGGAAAGATTCTTATGCCAAAGCAAGCTGATTCC
GAGAAAAAACTAAGGAATCTTCTAAATTTAACCTTCTCGTAATCT---
CAAAAGAATGGTACGATATGGCTAGAATTTAGGAGAAAAGA
PE Popham DL,et al. 1994
pbpE ND 3534500..3534619 ND AATAGTGAACGGCAGGTATATGTGATGGGTTAAA
AAGGATCTCTAACTGAAGGATTTTTCAAAATATTTGAAACGTTAG-TA
GGTTAGTAACGTACAGAGATATGGGAGGTGGAGGAATGA
PE Popham DL,et al. 1993
pbpF ND 1082984..1083103 ND TACGATCGTTTTTAAAAAATCGGCTGTCCCATAT
GTAATATAAACCTTCATATCAGCCACCTCCTGCTTGCTAGTATAT---
CAAAACAATGGTATAAGTTTCTATTGGCGAGTGCTTCGAAC
PE Popham DL,et al. 1993
pdhA pdhA-pdhB-pdhC-pdhD 1527498..1527573 -64:+12 AAGGTTTTGGCAAACTGGGGATCGGCTAAAATATAATACGACTTAC
TGCTGATACTTTAGGGTACCCTAAGTTTGT
reverse transcriptase mapping
Northern blot
Gao H, et al.
Hemila H, et al.
2002
1990
pdhC pdhC-pdhD 1529690..1529767 -70:+8 AGACGTTCTTGAAACAGCAAGAAAAGTGCTTGAATTTTAATCAAAC
TGCATAATCGAGAGGGAAGATGAACGTTTTCC
reverse transcriptase mapping
Northern blot
Gao H, et al.
Hemila H, et al.
2002
1990
perR
943734..943779 -41:+5 ATCAATTGACAAATTATCGTAGAAAGAGTTACACTAATTATAAA
CA
PE,HM Fuangthong M, et al. 2002
pgk pgk-tip-pgm-eno 3480659..3480716 -49:+9 AAAGGACCTGACTTGGTTCTTTCGAATAGAAGCGCTATAATGAAAG
CGGACAAGGGAA
PE Ludwig H, et al. 2001
phoA ND 1017751..1017870 ND AGGCAAGATAACGAAAAGCGTTTTTTCATTTCCT
TACAAGGCTTTCATTATTGTTTACATGATCAACAGCCGCATTTAA---CA
AAGTTTCCCTAACATGATAAACGGAATACATTAAAGGAG
PE Hulett FM,et al. 1994
phoB phoB-ydhF 621065..621113 ND AAATCGATTAATACTAGCTTAACAGTTTAAAAATATAATTGGGTTG
TCA
PE DP Chesnut RS, et al. 1991
phoP phoP-phoR 2977627..2977670 -39:+5 CGAATTGTCGGAATGTCCTGCTTTCGCTAAAATAAAATCATGAA
Northern blat, PE Pragai Z, et al. 2004
phoP phoP-phoR 2977605..2977649 -39:+6 TTTCGCTAAAATAAAATCATGAAACATGTTAAGATGACATAAAA
T
Northern blat, PE Pragai Z, et al. 2004
phrE
2659450..2659490 -33:+8 GTTAGGAGGCAACCTTTTCGATTATAATGGGAAAATAGAGG
PE, beta-GAL McQuade, R. S., et al. 2001
phrI
ND ND ND
PE, beta-GAL McQuade, R. S., et al. 2001
pmi pmi-lytD 3687717..3687765 -43:+6 AAAGGCTGAAACAAAGCTTGAAAAGCTGCACATATAATAGATAG
GAAGC
PE, SDS-PAGE Margot P, et al. 1994
ppiB ND 2434999..2435117 ND TTATTTTTTAGTAAAGCTCGGGAGATTCGTTTTC
CCCCGAAAGGTGTGGTATAATAGCCGCGACAAGGAGAGACAGGCT---
-ATAACCTATACATAATCTCCTTTGAAAATTAAAATAAAGA
PE Herrler M,et al. 1994
pssA pssA-ybfM-psd 247502..247547 ND GCGTCTTGTCCTTTTTATGCGGGGGGATAAAATAGTAAGGAACATG
ROMA,beta-gal Cao M, et al. 2004
pssA pssA-ybfM-psd 247562..247606 ND CATTTTTCAAAAGGTAACAAATGTTGTATAATAATAGAATTTGAA
ROMA,beta-gal Cao M, et al. 2004
pta
3865381..3865423 -38:+5 CTGTTTGAATTTGATTGGAAGAAGAGTATGCTAGTAAAAGAAA
PE Shin BS, et al. 1999
ptsG ptsGHI, ptsHI 1458612..1458657 -37:+9 TGCTTGTCAGATGACAAGTACGGTTGTATGATATAATATTGTGA
AG
PE
Reverse-transcriptase mappin, Northern blot
Gonzy-Treboul G, et al.
Stulke J, et al.
1989
1997
pucA pucABCDE 3340079..3340125 -40:+7 CTTCGTTTGACTCTTTTTACAAATCCTCTTTCTATGTGTTTCAT
TTT
PE,HM Beier L, et al. 2002
pucF pucFG 3342719..3342765 -41:+6 CTGTCAATGAACTATCATGTTGCTCCTTCTATAATGAAGTCACC
ATA
PE,HM Beier L, et al. 2002
pucH
3327676..3327719 -39:+5 TTGCTGATGTAATACGATCATAGTAGCAGTAAACTGTTGAAAAT
PE,HM Beier L, et al. 2002
pucI
3752831..3752879 -43:+6 ATAGCCAGTGTTATTGTCTGACTCTTCAGTTATATTAAGTGACA
TCTAA
PE,HM Beier L, et al. 2002
pucJ pucJKLM 3329461..3329506 -40:+6 ATCCAATGACACCCCTCGACCGGAACGATATTATGTTACTAAAG
TT
PE,HM Beier L, et al. 2002
purA ND 4155776..4155895 ND AACGCTTATAAAACGAATGGAAGCGAACGAATAT
AGATTTACAATAAATTAATGTTCGGATTTACAATTGACTTTCTGT---
TTCTTCACTGATAAACTTGATTTGTTTGAATAGAATCGTTT
PE Mantsala P,et al. 1992
purE purEKBCSQLFMNHD 697612..697731 -38:+6 TTGAAGGGAAATTGATCTAAAACACGAACATTAG
TAGAATGAATTTTTGTATCGTTCGATAATATCGTTGACATTATCC---
ATGTCCGTTGTTAAGATAAACATGAAATCAAAACACGACCT
S1 nuclease mapping Ebbole DJ, et al. 1987
pyrR pyrR-pyrP-pyrB-pyrC-pyrAA-pyrAB-pyrK-pyrD-pyrF-pyrE 1617419..1617462 -40:+4 ACGGTTGACAGAGGGTTTCTTTTCTGAAATAATAAACGAAGCTG
PE Quinn CL, et al. 1991
qcrA qcrA-qcrB-qcrC 2364351..2364395 -39:+6 TATATTGACCTTGCTGAGAGATTCATATATTATGAGGGTGTCTA
G
PE,HM Yu J, et al. 1995
rapA rapA-phrA 1315046..1315166 ND GGTGTTTGAAAAACCCGTGCTTTTTTGTTGCGGT
TAGCCGAAATTCGACAATTGCGGTTATTTTGCGTTCTTCTTTTTC--T
TGTAAATATGATAAAATATGACATATCTCGGGTAATTCAAA
PE Mueller JP, et al. 1992
rapC
428331..428370 -37:+4 GGGTTGGGACGGCCTATAAACATGATAAAATATGACATAA
PE Lazazzera BA et al. 1999
rbsR rbsR-rbsK-rbsD-rbsA-rbsC-rbsB 3700304..3700423 ND GAGTGAAAACCTTAAATTTTTCAATTATATATA
CAATTTACAATTAGATTTCTTTTGATATTTTTATTGCTAACTTCG--G
ATTGTTCATGATAATCTATCTATGTAAACGGTTACATAAAC
PE O'Reilly M,et al. 1994
recA ND 1763786..1763905 ND TGATACATTATGATATTTTGATAGGAATCACGCC
AAGAAAAAATCCGAATATGCGTTCGCTTTTTTCTTGGCAAATCCC---
TTCAAACAGGGTATAGTATATGTAGTGGTAACATAAAGGAG
S1 Cheo DL,et al. 1993
resA resA-resB-resC-resD-resE 2420563..2420617 -50:+4 CTTCAAAAAGTAAGAAATGTGAAATGAACGTGCAATGATATAATTGAA
TGGATCT
PE Sun G, et al. 1996
resD resD-resE 2417117..2417164 -44:+5 ACACAGTTCTCAAACTTTCTCACGATTTGATAAAATGAAAGTAA
CAGA
PE Sun G, et al. 1996
rpmH rpmH 4214428..4214555 ND AGGTTTCGAAAGTTGAAAAGGTATGGTATCCTATTATGGTTGCAAGAAAT
AAAAGCACTAGTGAAGTTGACAATGAATAGGTAACGCAAATATAAT
AAGTAAGACTGTCTTTAACAGCTATTCCTCGA
S1
S1
Moriya S,et al.
Ogasawara, et al.
1985
1985
rpmH rpmH 4214510..4214560 ND AAATAAGGTTTCGAAAGTTGAAAAGGTATGGTATCCTATTATGGT
T
GCAAG
S1 Ogasawara N,et al. 1985
rpoB
121662..121706 -41:4 AAAGTTTGACTCGGTATTTTAACTATGTTAATATTGTAAAATGC
C
PE, SDM Boor KJ, et al. 1995
rpoE
3812161..3812224 ND ATTAACGCTGTTAAGGGTAGCATATTCTGTTTTATTTTGTTTATAATG
AGAGGTATGGTTTGTA
Electrophoretic mobility assay Lopez de Saro FJ, et al. 1999
rpsD ND 3034487..3034606 ND ACCTAAAAGTTTACCACTAATTTTTGTTTATTATATCATAAACGGTGAAG
CAATAATGGAGGAATGGTTGACTTCAAAACAAATAAATTATATAAT
GACCTTTGTGTGAAATATTGCAGC
PE Grundy FJ,et al. 1990
rrnA-16S ND 30001..30103 ND GCGTTAGTCGTCA
TTAAGCAATTTATCATTTAATTGATATTATGTATTGACTTAGACA---
ACTGAAGGTGTTATTCTAATATACGTCGCTGATGACGAACAGCTT
S1 Ogasawara N,et al. 1983
rrnA-16S ND 30060..30179 ND CTGAAGGTGTTATTCTAATATACGTCGCTGATGACGAA
CAGCTTTTTTGAAAAGAAAATGCTAAAAAGTTGTTGACAGTAGCG---
GCGGTAAATGTTATGATAATAAAGTCGCTTAAACGAG
S1 Ogasawara N,et al. 1983
rrnB-16S ND 3177931..3178050 ND CACACGCTTTAGAAATCATGGCGAGGATTATAGT
TTATTTGTTTTATAGATTTTTTTTAAAAAACTATTGCAATAAATA---
AATACAGGTGTTATATTATTAAACGTCGCTGATGCACAGCG
S1 Stewart GC,et al. 1983
rrnB-16S ND 3177838..3177957 ND ATTATTAAACGTCGCTGATGCACAGCGGACACAA
ACTAGATGCTTCAAAACAACTTGAAAAAAGTTGTTGACAAAAAAG---
AAGCTGAATGTTATATTAGTAAAGCTGCTTCATTGAGAAGT
S1 Stewart GC,et al. 1983
rrnD-16S ND 945656..945776 ND AACGTCTGCCAGATAGAAACGAAAGGACAGGCTG
TCTATCACCGAGGATATTCTTTTAAAAAAGGTGTTGACTCTGATT---
CTTGACCGTGTTATATTATTAAACGTCGCTGATGCGCTTCTG
Other Jarvis ED,et al. 1990
rrnD-16S ND 945753..945873 ND TTAAACGTCGCTGATGCGCTTCTGAGAAAACAAGC
TCACAGCGGCGGGAAAATAAATCAAAAAAACATTTGACAAAAGAA---
AGTCAAAATGTTATATTAATAAAGTCGCTTCAACAAGAAGT
Other Jarvis ED,et al. 1990
rrnG-16S ND 166281..166400 ND GCTTTGCACGCAGGAGGTCAGCGGTTCGATCCCG
CTAGGCTCCACCAAAAGTTTTTAAAAAAGGTTATTGACTTTGAAG---
AAGTGACATTGTATACTAATAAAGTTGCTTTAACAAAGCGG
Other Green CJ,et al. 1992
rrnO-16S ND 9437..9555 ND AGAAGAACAAGAAGAAGTGTGAAAAAAAGCGCAG
CTGAAATAGCTGCGCTTTTTTGTGTCATAACCCTTTACAGTCATA---
-AAAATTATGGTATAATCATTTCTGTTGTCTTTTTAAAGAC
S1 Ogasawara N,et al. 1983
rrnO-16S ND 9534..9653 ND TTTCTGTTGTCTTTTTAAAGACACAAGCATGACC
ATTATGACTAGTAAAAACTTTTTCAAAAAAGTATTGACCTAGTTA---
ACTAAAAATGTTACTATTAAGTATCGCTTTGAGAGAAGCA
S1 Ogasawara N,et al. 1983
rrnW-16S ND 96171..96290 ND TGCTTTGCACGCAGGAGGTCAGCGGTTCGATCCC
GCTAGGCTCCACCAAAAGTTTTTAAAAAAGTTGTTGACTTTGAAG---
AAGTGACGTTGTATACTAATAAAGTTGCTTTAACAAAGCGG
Other Green CJ,et al. 1992
rsbR rsbR-rsbS-rsbT-rsbU-rsbV-rsbW-sigB-rsbX 518824..518943 ND ACAAATCAGTTTGGCACTCATTGATTTTTAGACA
TATTTGCAGGTTGCTCAAATAGAGCAACTTTTTTTGTTTTCAAAA---
AACATAAACGATATAATAGTGAAATAACGAAAAAATATGTT
PE Wise AA,et al. 1995
sacX sacX-sacY 3940862..3940987 ND AAGGTTTTTTTCATTCTAAGAACACCACACACAA
CCTTTTTCCCATCCATTGTACAGGCTTTTCATACTATTGCTATACAGC
---CATGAACAGCATAAAATGAACGTTATTACAGTTATCACCACAT
A
PE Crutz AM,et al. 1992
scr scRNA 26335..26387 -42:+11 GTACGGTTGCAATTTTTAGGGGAAACAGATATACTTAAGTGTGC
ATCGTAATA
S1 Struck JC, et al.
Struck JC, et al.
1989
1990
sdhC sdhC-sdhA-sdhB 2907879..2907998 -102:+18 ATTGATAAAATAAAATTTTTCAATCAACTAATCAATTCGGAAAATTATAA
TTTATGTACGCGTTTTCTTGACGCCCTTTTGAGGGAGGAGTAAAAT
GAAATTGTCAATAAATCTTAATAA
S1
S1
3036777
1987
1989
sigD sigD 1715726..1715776 ND ATATTCGAACTGTTAAACAAGGTGAAAAAACGATTTAATTAAGGT
ATTAGG
ND Allmansberger R 1997
sigH ND 116469..116589 ND AAAATTGCTTTATCGGAAGAGGTTTTGAAAACGT
TTGAAAAGTGGAGGCGGGGAGACTTAGATTAAGTTGACGCTTTTT--T
GCCCAATACTGTATAATATTTCTATCTACGTGCGCCGGGGG
PE Weir J,et al. 1991
sigI
1411062..1411116 ND GAAAGGCACGAAATCATGTATAGAACGTCAGAATGGTTTGTCAT
AATTGAGACAT
DB, PE Zuber, U., et al. 2001
sigX sigX-rsiX 2414453..2414496 -40:+4 TTCCCTTCCAAATTCCAGTTACTCGTAATATAGTTGTAATGTAA
RO,PE,beta-gal Huang X, et al. 1997
sinI sinI-sinR 2551503..2551562 -53:+7 ACCATTCGACATCATTCTCGTTTTTTTTGAGAAAATACGATTATAATA
AAGGTATATTGG
PE,HM Shafikhani SH, et al.
Gaur NK, et al.
1988
2002
sinI sinI-sinR 2551584..2551629 -41:+5 TGGCAAATGACTTCCAGAGACTAATGAAGCATACAATAAGTCAT
GG
PE,HM Gaur NK, et al. 1988
sinR sinR 2551821..2551880 -48:+12 AGCCAGAAGTCATACCGTAAATCCTTTCTGAATGTGCTATAATATCAC
AAGGAAGGTGAT
PE,HM Gaur NK, et al. 1988
sipS
2432802..2432850 -40:+9 ACCAAGCTGAGAAACGAACCCAATTAGTATGTAATCAAAATTAA
GTAAA
PE, Northern blot, beta-gal Bolhuis A, et al. 1996
speD
2965967..2966012 -40:+6 GCACCTTGCAAATTAGACTTAAACACAGTATACTATTTTTCGTG
AA
PE,Northan blot Sekowska A, et al. 2000
spo0A ND 2518244..2518363 ND TATTTATGGAAAAGAAAAAGCAAGCTGACTGCCG
GAGTTTCCGGCAGTTTTTTTATTTTGATCCCTCTTCACTTCTCAG---
AATACATACGGTAAAATATACAAAAGAAGATTTTTCGACAA
S1 Chibazakura T,et al. 1991
spo0B ND 2853821..2853940 ND TCTGCCTGGCTGCAAATCAACCAAAGCCAGA
AAAAAGGAACATGATATTTCTGGGAAAAACAATTGTTTTTCTAACAAAGC
CTTCTCTGTTATAATTCATAATACACACTTATACAGACT
S1 Trach K,et al. 1989
spo0E ND 1429840..1429959 ND ATTGTTCTTCTAATCCTATCAATATATCTATTAT
ACCTGAAAAATTAACTTATTTAATGAAAATATGTTTACAAATAAA---
GTATAATCTGTAATAATGCACAATAACCCAATCAAACTTGT
PE Perego M,et al. 1991
spo0F ND 3809002..3809123 ND ATTTTCAACATAAGTGAATCCTCCTTTATAACGT
ACAATATCAGTATACAACAAAAGAGAAAATGCTCAGAAAATGTCG-TA
AAGTAGACTATTATAATTAAAGGAAATAGGAAAATCAAACA
S1 Trach K, et al. 1988
spoIIE ND 70401..70522 -106:+16 TTCTTTTCATAAACGAATATCAAGGCAGAAACCGTCGAAGATTTCTTTGG
TATTGTTACCTTCTTTTGACAAAATCCTATCTGTGCTTTCGCTATAA
T
GACAGGCAACGAATATAACAGGTG
PE York K,et al. 1992
spoIIGA ND 1602939..1603049 ND TCGACAAATTAAGCAGATTTCCCTGAAAAATTGTATTTTCCTCTCAACAT
TAATTGACAGACTTTCCCACAGAGCTTGCTTTATACTTATGAAGCA
AGAAGGGGAACAGCG
PE Kenney TJ,et al. 1989
srfAA srfAAB-comS-srfACD 376132..376251 ND AAAAATATTGCTGTAAATAAACTGGAATCTTTCG
GCATCCCGCATGAAACTTTTCACCCATTTTTCGGTGATAAAAACA---
TTTTTTTCATTTAAACTGAACGGTAGAAAGATAAAAAATAT
PE Nakano MM, et al. 1991
tagA tagA-tagB 3680283..3680329 -42:+5 TAATGTTAATCCTTTGTTGAAGATTTATGTTAAAATATAAGGTA
GCT
PE Mauel C, et al. 1995
tagC
3682387..3682432 ND TTCTATTGAATACCGAACGTATGTTTGCTTTAATGTAATTAGTTGC
CAT assay, beta-gal Cheo DL, et al. 1991
tagD tagD-tagE-tagF 3680116..3680161 -40:+5 AGTACTTAACCTTTTTTAGGCGGTATGCTATAATTAATGATCAG
TG
PE Mauel C, et al. 1995
tetL ND 4188183..4188268 ND A
ATCTGGTCAAATTTTTATAAAAAAAGTAAAAGTTTAATCCTTAGT---
-CTATATATAATAAGATCATATCAATCAAATGTAGGGGGAG
S1 Sakaguchi R,et al. 1988
thrS ND 2960515..2960593 ND
TTTAAAAAAAAGGAAACGCGATCGTGTTGATTTTTTGG---
ATTGAACAATTTATAATACATAGGAGATTAAGAAAGACACA
PE Gendron N,et al. 1994
treP treP-treA-treR 849619..849660 -38:+4 GTGTTGACTACCTGTATATACAGGAATACAATATGATTATAA
PE Schock F, et al. 1996
trpE trpEDCFBA 2376801..2376920 ND GTCCCTCAGGATCAGATCAGACATGTATATTTA
GAAAAAGTTGTCGTATTGAGGCCCGATTTATCATTGACAAAAAAT--A
CTGAATTGTAATACGATAAGAACAGCTTAGAAATACACAAG
S1 Shimotsu H,et al. 1984
trxA trxA 2912417..2912473
AAAATAGCGTGAACGAATGGGAGATGCTATACTAAAAATCAT
CATTTCACATTGGAG
PE,2D-gel Scharf C, et al. 1998
tyrS ND 3037193..3037312 ND GCTGAAGGCATGGGAGCTTAATCTGCCGGCTGGA
GATCTGTCAACAATGGAGGATTAAAAGGCGGCGTTGACACAGGAT---
TTTATTTATGTTAAAAATGATATAGCTTCATATGAAAAGGT
PE Henkin TM,et al. 1992
ureA ureABC 3768962..3769007 -39:+6 TTCTTTGAATTAATAGGCCTCTTCTATATAATGATGACATAA
GTTG
PE, beta-gal Wray LV Jr, et al. 1997
valS valS-folC 2868837..2868887 -43:+8 AGATGATTGACGAATCAAAAACACTTTTACTATAATAAAGAACA
TAAATAA
PE,Northan blot Luo D, et al. 1997
veg ND 52644..52763 -102:+18 CATAGAATTTTGTCAAAATAATTTTATTGACAAC
GTCTTATTAACGTTGATATAATTTAAATTTTATTTGACAAAAATG---
GGCTCGTGTTGTACAATAAATGTAGTGAGGTGGATGCAATG
RO Whipple FW,et al. 1992
wapA
4029598..4029641 -40:+4 AAATATTGTAATGATATTTCAGTCTAGTTAAGATTATTGAGTAA
PE,beta-gal Dartois V, et al. 1998
xpt xpt-pbuX 2319403..2319447 -40:+5 CAGCCTATGCAAGAGATTAGAATCTTGATATAATTTATTACAAT
A
PE,HM Christiansen LC, et al. 1997
xsa xsa 2914307..2914353 -38:+9 GTCGTTGACATGTACGAACATATATAATATGGTTACTTTAAAAG
CGC
beta-gal,PE Raposo MP, et al. 2004
xylA xylA-xylB
-47:+17 CTAAAAAAAATATTGAAAATACTGACGAGGTTATATAAGATGAAAA
TAAGTTAGTTTGTTTA
S1 Hastrup S. Genetics and biotechnology of Bacilli, vol.2 p.79- 1988
xylR xylR 1886186..1886256 ND
AACTTTCTGAAAAAGATGTTGAAAAAGTCG---
AAAGGATTTTATAATATTAAGTCAAGTTAGTTTGTTTGATC
Other Kreuzer P,et al. 1989
xynP xynP-xynB
-64:-11 CATTCTGTTTAAACTTTCTGAAAAAGATGTTGAAAAAGTCGAAAGGAT
TTTATAATATTAAGTCAAGTTAGTTTG
S1 Hastrup S. Genetics and biotechnology of Bacilli, vol.2 p.79- 1988
yaaA yaaA-recF-yaaB-gyrB 3139..3190 ND CCCTTTCCCTAATTCGTTTTTTTTTAGTACAATTAGATATTAGTGA
TATTTG
S1 Ogasawara N,et al. 1985
yaaB yaaB-gyrB 3599..3668 ND TCAAATGACAAAGAACTTATACGGTGGGACAAAGACTATGCTAAAATA
GAGGGAAGAGTGATGAAGCAAA
S1 Ogasawara N,et al. 1985
ybbB ND 185041..185089 ND GCTTTATATAGGAAAACTTTCATTTATTTGGTACAATTTTTATTGA
AAA
HM Baichoo, N., et al. 2002
yccC
290400..290445 -40:+6 GATCTTTTGACTGAATAGATAAAATGTACAATGATTAATCATCA
TA
PE,HM Sun D, et al.
Fisher SH, et al.
1993
2002
ycdH ycdH-ycdI-yceA 307781..307857 -43:+34 ATTTATTCTTGCAAAACGTAATGACTTCGGTTTATTATGATATA
GGATTACAAAATCGTTATCATTTTGATTTAAAG
PE Gaballa A, et al. 2002
yciA yciA-yciB 363737..363801 -40:+25 TTTCTCTTGATTTTCAACAGTGAACCGATCAAAATAAATAGTAA
TTATTACGATTTGTTAGTGAG
PE Gaballa A, et al. 2002
yciC yciC 365318..365389 -43:+29 AAAACCGTTGACAAAAAGGAAAAAAGACCATACAATTTAAGTCG
TAACAATTACGTTTTATGATAAATGGCT
PE Gaballa A, et al. 2002
yczA yczA-ycbK 276749..276793 -40:+5 AGAATTGACTTCGTTTCATGAACCGAGTATTATAAACTCTACAA
A
ND Sarsero JP, et al. 2000
yfmP yfmP-yfmO 811412..811457 -41:+5 TTAACGTTTACGTTAAGGTTCAAAAGGTGTATAATGGTAACAGA
AA
PE Gaballa A, et al. 2002
yhaG
1074533..1074593 -42:+19 AAAGTCTGGCTATGCAAACCGTCCGTTTGGTATACTGTTTGCAT
AACACATTCTGTAAAGC
PE Sarsero JP, et al. 2000
yjcI yjcI-yjcJ 1257554..1257600 -40:+7 AAGTGTTGAAATAAACTGTGAATTGCGCTAATATAAAACAATCA
GAA
PE Auger S, et al. 2002
yjmA yjmABCDEFGHIJ(No experimantal validation) 1299668..1299715 -39:+9 GAGATTGATCCCAAAGGAATATAAAGGTAAAATAAAAACAAATC
AAAA
PE Mekjian KR et al. 1999
yklA yklA 1380207..1380262 -50:+6 TTTATACGCGAAAAATTGACATTTCAAATTTAATTGTGTACAATTTAATT
GTATAA
PE,HM Volker U, et al. 1998
ykoL ykoL 1397422..1397465 -39:+5 ATTCATACCACGTTCATTTAAAAAGAGTATCTTTTGTATAGGAT
Northern blat, PE Pragai Z, et al. 2004
ykuN ND 1486259..1486302 -1:-44 ATTTATCTGTTGACAATGAAAATCATTATCATTTAAAGTGATAC
HM Baichoo, N., et al. 2002
ykvW
1450534..1450577 -38:+6 ATAATTGAAATTCTCTTCGTGCGTGCTATAATAAAGGAAGACAT
PE,HB Gaballa A, et al. 2002
ylxM ND 1670988..1671107 ND CGGAATAAATTGGATGATATTTAGCGTATTTTGGAAAAGTTAATCGCCGC
TTTGACAAGATAAAAACTTGACAGTGTCA---TTAAAACCGTGTAAA
CT
AAGTTATCGTAAAGGGATTTGACT
PE Honda K,et al. 1993
yneI yneI-yneJ 1923164..1923210 -42:+5 TCGTACTACTACTAATCCTTTTGTTTTTGGTACAATAAGACTATTA
T
Northern blat, PE Schiott T, et al.
Schiott T, et al.
1997
2000
yneJ yneJ 1923614..1923660 -42:+5 TCAAAATGGTTTTTTTTATTGTTTTGGAGTATAGTATATAGTATCA
A
Northern blat, PE Schiott T, et al.
Schiott T, et al.
1997
2000
ypuE ypuE-ribD-ribE-ribA-ribH-ribT 2430822..2430873 -43:+9 TATTTCATTGCGTACTTTAAAAAGGATCGCTATAATAACCAATA
AGGACAAA
Northan blot, S1 mapping
Northan blot
Mironov VN, et al.
Perkins JP, et al.
1994
1999
yqxD yqxD-dnaG-sigA 2603255..2603301 -42:+5 AACAATAGCATCTTTGTGAAGTTTGTATTATAATAAAAAATTGT
GAT
S1 Wang LF,et al. 1987
yqxD yqxD-dnaG-sigA 2603283..2603328 -42:+4 TGGCTGTGCCAAAAGGGAATAATGAAAAACAATAGCATCTTTGT
GA
S1 Wang LF,et al. 1987
ytkD
3134535..3134579 -40:+5 AAAGGCTTCCGAAGAAACGTAACTGTGGTATGATGTATGGAAGA
T
PE,Northan blot,RT-PCR Ramirez MI, et al. 2004
ytrA ytrABCDEF 3118527..3118573 -41:+6 AAAGGATTGACTTTGTGAGTCAAAGTATTTATTGTATTAAGTGT
ACT
Northern blat, PE Yoshida K, et al. 2000
yuiI ND 3292452..3292491 ND AAGTTGACTTTCTTTGGAAGAAAACCTATTATTTGAGGTG
HM Baichoo, N., et al. 2002
yuxH ND 3258327..3258449 -106:+17 TAAAGAAAAACTGGCCTTTCATTCGCGAAGGGCCAGTTTTCTTTATGTAT
ATATTATTTTTCATGTTTAGACAATTTTCGTCAAATTATTTGATA
TACT
TAGGGGTGAAAGCCGCGCGTATTG
PE Weinrauch Y,et al. 1989
yvgR
3433226..3433270 -40:+5 TATATTTTACTTAAGCCTAGTATTCCGGTAAAGTTCAATTAGAT
G
PE Guillouard, I., et al. 2002
ywbI ywbI-thiM-thiE 3932165..3932213 -40:+9 TACTTATTGTACATAAGGTCTCTCTATAGGTAAAATATATATTA
AGAAT
PE,Northan blot Zhang Y, et al. 1997
ywfK
3864273..3864315 -39:+4 CCTTCTTTACCAAGACGGATGATATGAGTACAATAAAGAAAAC
PE Guillouard, I., et al. 2002




Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2004
Contact: knakai@ims.u-tokyo.ac.jp