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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | appDFABC |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| appD | + | 1210785..1211771 | oligopeptide ABC transporter (ATP-binding protein) | COG0444 | appD-BAC-1 appD-BAC-2 appD-CLO | |
| appF | + | 1211768..1212757 | oligopeptide ABC transporter (ATP-binding protein) | COG4608 | ||
| appA | + | 1212845..1214476 | oligopeptide ABC transporter (oligopeptide-binding protein) | COG0747 | ||
| appB | + | 1214552..1215505 | oligopeptide ABC transporter (permease) | COG0601 | ||
| appC | + | 1215522..1216433 | oligopeptide ABC transporter (permease) | COG1173 |
| Operon evidence: | Genome analysis |
|---|---|
| Reference: | Koide A & Hoch JA (1994) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| Hpr | Negative | ND | ND | ND |
Koide A, et al. (1999): DB OV |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AAAAAGCAGGTCTCCTTTAGTCAGAAAATATACAAAGAGATCTGCTTTTTATGATTCTTA >>>>>>>>>>>>>>>> <<<<<<<<<<<<<< |
appC |
|