 |
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | ccdA-yneIJ |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| ccdA | + | 1922443..1923150 | integral membrane protein | COG0785 | ccdA-BAC x0550-BAC | |
| yneI | yoxH | + | 1923239..1923601 | COG0784 | ||
| yneJ | yoxI | + | 1923680..1924171 | COG4846 | yneJ-BAC |
| Operon evidence: | Northern blotting (1.8 kb transcript) |
|---|---|
| Reference: | Schiott T, et al. (1997), Schiott T & Hederstedt L (2000) |
| Comments: | Internal promoters in front of yneI and yneJ, leading to a 0.9 kb yneIJ transcript and a 0.5 kb yneJ transcript respectively. |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigA | Promoter | -44:+5 | 1922295..1922343 | TCAAATGAGAAGGAGTATAATGTCTCAATGTCAAATTAAATTATATAAG |
Schiott T & Hederstedt L (2000): PE NB |
| SigA | Promoter | -42:+5 | 1923164..1923210 | TCGTACTACTACTAATCCTTTTGTTTTTGGTACAATAAGACTATTAT |
Schiott T & Hederstedt L (2000): PE NB |
| SigA | Promoter | -42:+5 | 1923614..1923660 | TCAAAATGGTTTTTTTTATTGTTTTGGAGTATAGTATATAGTATCAA |
Schiott T & Hederstedt L (2000): PE NB |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AAAAACCTTTCCTCTTGTCAGGAAAGGTTTTTTATTTGAGAA >>>>>>>> <<<<<<<< |
yneJ |
|