Regulated Operon: cgeAB

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
cgeA cgeAA + 2147874..2148275

 
cgeB cgeAB + 2148282..2149235
COG4641  

Operon evidence: Northern blotting (1.4 kb transcript)
Reference: Roels S & Losick R (1995)
Comments: A shorter 1.0 kb transcript was also detected, which may be due to a terminator inside the cgeB coding region, or a processing or degradation product of the 1.4 kb transcript.


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
GerE Positive -72:-41 2147772..2147803 AATAGATGAAAAATAGATCAGGTACGGCGTTC Roels S, et al. (1995): HB
GerE Positive -83:-52 2147761..2147792 CATTTTCCTTAAATAGATGAAAAATAGATCAG Roels S, et al. (1995): HB
GerE Positive -100:-69 2147744..2147775 CTCCATTAAAAAATCAGCATTTTCCTTAAATA Roels S, et al. (1995): HB
GerE Positive -126:-95 2147718..2147749 TCGATTTATGGTATAGGCTATGTCCACTCCAT Roels S, et al. (1995): HB
GerE Positive -148:-117 2147696..2147727 CTGTTTCACAATATGTGCGACTTCGATTTATG Roels S, et al. (1995): HB
SigK Promoter -43:+5 2147801..2147848 TTCGACTCATACCAAATAACAGCCGGAAGAATATGAATAACGTGAGTT Roels S, et al. (1995): PE NB DB
YlbO Positive ND ND ND Kuwana R, et al. (2005): SDS NB DB

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
AAAAATCGTTCATTGCTATGAACGATTTTTTTATTCATAG
     >>>>>>>>    <<<<<<<<
2149240..2149259
5..24
-10.6
cgeB

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai