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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | citG |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| citG | fumC | - | 3388051..3389439 | fumarate hydratase | COG0114 | fumC-BAC fumC-STA fumC-BAC fumC-STA |
| Operon evidence: | upstream and downstream genes are in the opposite direction |
|---|---|
| Reference: | Miles JS & Guest R (1985) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigA | Promoter | -50:+7 | 3389733..3389789 | AAACCTTAGTAGAGGTTATCTTTTCCTGTTAAAAAAATGATATACTGTGTTAGAGTA |
Feavers IM, et al. (1988): S1 Tatti KM, et al. (1990): PE Price VA, et al. (1990): DB |
| SigA | Promoter | -44:+7 | 3389719..3389769 | TTTTCCTGTTAAAAAAATGATATACTGTGTTAGAGTATTTCATGGAGTAAG |
Feavers IM, et al. (1988): S1 Tatti KM, et al. (1990): PE Price VA, et al. (1990): DB |
| SigH | Promoter | -43:+5 | 3389466..3389513 | AAAAATAAAAAGGATTTTTTGTGTCATTGGCGAATTATGATCTATTGA |
Feavers IM, et al. (1988): S1 DB, fumarase activity Tatti KM, et al. (1990): PE |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AAGAACGGCTGCTTTTTAAGCAGCCGTTCTTCTAAATATGT >>>>>>>>> <<<<<<<<< |
citG |
|