Regulated Operon: codV-clpQY-codY

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
codV
+ 1686487..1687401 site-specific integrase/recombinase COG4974 codV-BAC  
clpQ hslV, codW + 1687414..1687959 two-component ATP-dependent protease (N-terminal serine protease) COG5405 hslV-BAC hslV-BAC  
clpY hslU, codX + 1687976..1689379 two-component ATP-dependent protease (N-terminal serine protease) COG1220 clpY-BAC clpY-STA clpY-BAC clpY-STA hslU-LAB  
codY
+ 1689419..1690198 transcriptional regulator COG4465 codY-BAC codY-STA x0200-STR  

Operon evidence: plasmid integrations and in-frame deletion mutations
Reference: Slack FJ, et al. (1995)
Comments:

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigA Promoter -43:+6 1686420..1686468 GTATTGATTGCAACCTGAGCGCGATTTGTGATACCATTTAAAAGCCCTT Slack FJ, et al. (1995): PE

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
AAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAA
     >>>>>>>>   <<<<<<<<
1690208..1690226
10..28
-12.2
 codY

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai