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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | comA-yuxO |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| comA | srfB, comAA | - | 3251848..3252492 | two-component response regulator | COG2197 | |
| yuxO | srfB, comAB | - | 3251449..3251829 | COG2050 |
| Operon evidence: | S1 nuclease mapping |
|---|---|
| Reference: | Guillen N, et al. (1989), Weinrauch Y, et al. (1989) |
| Comments: | S1 nuclease mapping showed that termination occurs in the TTATTTT stretch. |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigA | Promoter | -43:+19 | 3252500..3252561 | CGGAAACGACTTGGCACAGGCCAAGTCTTTTTTATAAAATGGAAAAGAGTGAGTAAAAGGGA |
Weinrauch Y, et al. (1989): S1 |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AAAAACAGCCGGAACTCTGCCTGTCCGGCTGCTTATTTTTATAAATA >>>>>>>> <<<<<<<< |
yuxO |
|