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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | cotM |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| cotM | yneL | - | 1924864..1925256 | spore coat protein (outer) | COG0071 |
| Operon evidence: | "downstream gene yneK, unlike cotM, is not induced during sporulation" |
|---|---|
| Reference: | Henriques AO, et al. (1997) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| GerE | Negative | -42:-19 | 1925286..1925309 | TTATGCGTTCACCCATTTATACTC |
Henriques AO, et al. (1997): DB RG |
| SigK | Promoter | -42:+3 | 1925265..1925309 | TTATGCGTTCACCCATTTATACTCCACCGCATATGATGTAAAGCA |
Henriques AO, et al. (1997): PE DB RG Reischl S, et al. (2001): RG HB DB |
| unknown | Promoter | -42:+3 | 1925255..1925299 | ACCCATTTATACTCCACCGCATATGATGTAAAGCAAGGTTGATAT |
Henriques AO, et al. (1997): PE RG Reischl S, et al. (2001): RG HB |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AAAAAGTCACTTTCATCCCCTATTATGAAAGTGACTTTTTTTCCGTCCAT >>>>>>>>>>> <<<<<<<<<<< |
cotM |
|