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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | csbC |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| csbC | yxcC | + | 4087022..4088407 | sugar transporter | COG0477 |
| Operon evidence: | Northern blotting (1.5 kb transcript) |
|---|---|
| Reference: | Akbar S, et al. (1999), Yoshida K, et al. (2000), BSORF |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigB | Promoter | ND | 4086914..4086968 | TTTTCAAAACAAATGTTTCAAATGAGATAGGAAATGGGTACTAATCTATTAACTT |
Akbar S, et al. (1999): RG; binding site mutation |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AAAAAGGAATCGTCTCCTTATGAGACGATTCCTTTTTCTGTTTACAC >>>>>>>>>>> <<<<<<<<<<< |
csbC |
|