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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | cssRS |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| cssR | yvqA | + | 3384751..3385428 | two-component response regulator | COG0745 | |
| cssS | yvqB | + | 3385425..3386780 | two-component sensor histidine kinase | COG0642 |
| Operon evidence: | Genome analysis |
|---|---|
| Reference: | Hyyrylainen HL, et al. (2001) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| CssR | Positive | -76:-39 | 3384657..3384694 | TGGGATAAAAATGAAAAGAATATGTGAAATTATGAAAA |
Darmon E, et al. (2002): PE RG |
| SigA | Promoter | -63:+9 | 3384589..3384660 | TCATCCTACATCTTCCTCGCTCTTTTTCTCTTCCTTTCTTCCCTTAACCATATCATAAACAAACATTGTGGG |
Darmon E, et al. (2002): PE |
| SigA | Promoter | -46:+11 | 3384687..3384743 | TATGAAAATTGCCTGCCGTATGTTAAAACTAGTTTATAATGACGTTGAAAGGATGTG |
Darmon E, et al. (2002): PE |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| CAAAATAGACTGTAGATGTTTTGCAGTCTATTTTTTTATGTGAAA >>>>>>>>>>> <<<<<<<<<<< |
cssS |
|