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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | cymR-yrvO-trmU |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| yrzC | cymR | - | 2811027..2811362 | COG1959 | ||
| yrvO | - | 2809786..2810925 | yrvO-BAC | |||
| trmU | yrrA | - | 2808640..2809764 | tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase | trmU-BAC trmU-MYC trmU-STR |
| Operon evidence: | Genome analysis |
|---|---|
| Reference: | Choi SY, et al. (2006) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigA | Promoter | -50:+10 | 2811433..2811491 | CCTTCTGCCTCAATGAAAATTCGCTGAAGGTATGTTATAATAACAGTTGGTCTATAAGA |
Choi SY, et al. (2006): PE |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| ATAAAAGATGAAAAACCTCAACACTGAGTTGGGGTTTTTTAATGAAAGG >>>>>>> <<<<<<< |
trmU |
|