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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | dacB-spmAB |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| dacB | - | 2422577..2423725 | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5*) | COG1686 | ||
| spmA | ypuJ | - | 2421999..2422589 | spore maturation protein | COG2715 | |
| spmB | ypuK | - | 2421455..2421994 | spore maturation protein | COG0700 |
| Operon evidence: | lacZ transcriptional fusions |
|---|---|
| Reference: | Popham DL, et al. (1995), Sorokin A, et al. (1993) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigE | Promoter | -36:+7 | 2423746..2423788 | TTATTCATAACTGATGGACATGCGCATAAACTTGTACAAACCA |
Simpson EB, et al. (1994): PE Buchanan CE & Ling ML (1992): DB, immunoassay |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| GTTACGTTATTATTTGGGAGCGCCTGAAAACGGCGTTTTTTTTAGATTTG >>>>>>>>>>>>> <<<<<<<<<<<< |
spmB |
|