Regulated Operon: dctB-ydbD

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
dctB ydbE - 496207..497259 possible C4-dicarboxylate binding protein COG1638  
ydbD
- 495295..496116
COG3546 x0221-BAC  

Operon evidence: Northern blotting (2.0 kb transcript)
Reference: Asai K, et al. (2000), Genbank AB001488
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigB Promoter -41:+5 496137..496182 GTTTTTCGTTTATCTTTCTATCGATCGGAAATATAAAAAGAGATAA Price CW, et al. (2001): RACE-PCR DB

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
GACAAGCCCAAAACATGATGTTTTGGGCTTTGATTATGCCTTC
     >>>>>>>>>>   <<<<<<<<<<
495264..495286
9..31
-16.7
ydbD

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai