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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | dctB-ydbD |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| dctB | ydbE | - | 496207..497259 | possible C4-dicarboxylate binding protein | COG1638 | |
| ydbD | - | 495295..496116 | COG3546 | x0221-BAC |
| Operon evidence: | Northern blotting (2.0 kb transcript) |
|---|---|
| Reference: | Asai K, et al. (2000), Genbank AB001488 |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigB | Promoter | -41:+5 | 496137..496182 | GTTTTTCGTTTATCTTTCTATCGATCGGAAATATAAAAAGAGATAA |
Price CW, et al. (2001): RACE-PCR DB |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| GACAAGCCCAAAACATGATGTTTTGGGCTTTGATTATGCCTTC >>>>>>>>>> <<<<<<<<<< |
ydbD |
|