Regulated Operon: dps

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
dps ytkB - 3135286..3135723 DNA-protecting protein COG0783 dps-BAC x0191-STA  

Operon evidence: Northern blotting (0.5 kb transcript)
Reference: Antelmann H, et al. (1997), Lapidus A, et al. (1997)
Comments: A 1.2 kb transcript was also detected, which may have been a ytkA-dps transcript.


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigB Promoter -41:+3 3135740..3135783 AAGAGGTTTTAGCGTACGATATTAAGGGTATACATAGTCATATA Antelmann H, et al. (1997): 2D-PAGE, NB PE DB
unknown Promoter -39:+6 3135750..3135794 TAAGGGTAAAAAAGAGGTTTTAGCGTACGATATTAAGGGTATACA Antelmann H, et al. (1997): 2D-PAGE, NB PE

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
GAACGGCCGGATGTCTTAAAAAAGACGTCCGGCTTTTCTTTTTGTATC
     >>>>>>>>>>>>    <<<<<<<<<<<<
3135242..3135269
17..44
-22.4
dps

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai