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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | drm-punA |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| drm | yqkN | - | 2446435..2447619 | phosphopentomutase | COG1015 | deoB-STA |
| punA | pnp, yqkO | - | 2445607..2446422 | purine nucleoside phosphorylase | COG0005 | punA-BAC punA-STR pnpA-BAC pnpA-STA pnpA-STR |
| Operon evidence: | Northern blotting (2.1 kb transcript); transcriptional fusions |
|---|---|
| Reference: | Schuch R, et al. (1999), Wu JJ, et al. (1992) |
| Comments: | Northern blotting results in BSORF show a drm-punA, a ripX-drm-punA, and a fur-ripX-drm-punA transcript. Wu et al. consider a monocistronic punA transcript. |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigA | Promoter | -42:+17 | 2447656..2447714 | AATACATTGTCAACGGGAATGAAAACGGTTTATACTTGAGTTGTCAGACCTCTTAGCGA |
Schuch R, et al. (1999): PE |
| SigA | Promoter | -41:+6 | 2447638..2447684 | TATACTTGAGTTGTCAGACCTCTTAGCGATACAATAGACGTATAGAA |
Schuch R, et al. (1999): PE |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| CAAAAGACAGCTGTGTCTGATATCACACAGCTGTCTTTTTTTATGCCCAA >>>>>>>>>>> <<<<<<<<<<< |
punA |
|