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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | fapR-plsX-fabDG |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| ylpC | fapR | + | 1661267..1661833 | COG2050 | ylpC-BAC | |
| plsX | ylpD | + | 1661847..1662848 | COG0416 | plsX-BAC | |
| fabD | ylpE | + | 1662867..1663820 | malonyl CoA-acyl carrier protein transacylase | COG0331 | fabD-BAC fabD-STR |
| fabG | ylpF | + | 1663813..1664553 | beta-ketoacyl-acyl carrier protein reductase | COG1028 | x0651-BAC |
| Operon evidence: | Genome analysis |
|---|---|
| Reference: | Schujman GE, et al. (2003) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigA | Promoter | -45:+18 | 1661192..1661254 | ATCGTTGCATTCCAATCTATGAAATTATATACTACTATTAGTACCTAGTCTTAATTGTCCGGA |
Schujman GE, et al. (2006): PE |
| YlpC | Negative | -45:+18 | 1661192..1661254 | ATCGTTGCATTCCAATCTATGAAATTATATACTACTATTAGTACCTAGTCTTAATTGTCCGGA |
Schujman GE, et al. (2003): DB RG AR GS Schujman GE, et al. (2006): FT |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| GGCGGAATGGTGATGTAAGTTTTTTCTCGAAAATTTCATCGTAGTTTCTCTAGTTTTTT >>>>>>>>>>>>>> <<<<<<<<<<<<< |
fabG |
|