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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | feuABC-ybbA |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| feuA | - | 182368..183321 | iron-binding protein | COG0614 | ||
| feuB | - | 181345..182349 | integral membrane protein | COG0609 | ||
| feuC | - | 180168..181352 | integral membrane protein | COG0609 | ||
| ybbA | - | 179594..180163 | COG2819 |
| Operon evidence: | Genome analysis; downstream genes are on the opposite strand |
|---|---|
| Reference: | Baichoo N, et al. (2002) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| Fur | Negative | -6:+42 | 183321..183370 | CTATAATTCCAATTGATAATAGTTATCAATTGAACAGGAGGCTCTATAGA |
Baichoo N, et al. (2002): FT Ollinger J, et al. (2006): DB SDS-PAGE |
| SigA | Promoter | -42:+11 | 183352..183404 | GGAATTTGTCCATGGTGTTATATCTGTTCATTCTCTATAATTCCAATTGATAA |
Fuangthong M & Helmann JD (2003): PE |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AAAAACCGCTCAACCCTATGAGCGGTTTTTTTATGCCTTC >>>>>>> <<<<<<< |
ybbA |
|