Regulated Operon: feuABC-ybbA

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
feuA
- 182368..183321 iron-binding protein COG0614  
feuB
- 181345..182349 integral membrane protein COG0609  
feuC
- 180168..181352 integral membrane protein COG0609  
ybbA
- 179594..180163
COG2819  

Operon evidence: Genome analysis; downstream genes are on the opposite strand
Reference: Baichoo N, et al. (2002)
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
Fur Negative -6:+42 183321..183370 CTATAATTCCAATTGATAATAGTTATCAATTGAACAGGAGGCTCTATAGA Baichoo N, et al. (2002): FT
Ollinger J, et al. (2006): DB SDS-PAGE
SigA Promoter -42:+11 183352..183404 GGAATTTGTCCATGGTGTTATATCTGTTCATTCTCTATAATTCCAATTGATAA Fuangthong M & Helmann JD (2003): PE

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
AAAAACCGCTCAACCCTATGAGCGGTTTTTTTATGCCTTC
     >>>>>>>      <<<<<<<
179590..179609
-15..4
-13.1
ybbA

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai