Regulated Operon: fla-che

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
flgB
+ 1690578..1690967 flagellar basal-body rod protein COG1815 flgB-BAC  
flgC
+ 1690967..1691419 flagellar basal-body rod protein COG1558 flgC-BAC  
fliE
+ 1691430..1691750 flagellar hook-basal body protein COG1677 x1412-BAC  
fliF
+ 1691796..1693406 flagellar basal-body M-ring protein COG1766  
fliG flaA15 + 1693419..1694435 flagellar motor switch protein COG1536 fliG-BAC  
fliH
+ 1694553..1695179 flagellar assembly protein COG1317  
fliI
+ 1695166..1696488 flagellar-specific ATP synthase COG1157  
fliJ cheF + 1696491..1696934 flagellar protein COG2882  
ylxF
+ 1696946..1697587
COG3334  
fliK
+ 1697748..1699037
COG3144  
ylxG
+ 1699034..1699456
COG1843  
flgE flgG + 1699478..1700272 flagellar hook protein COG4786 x1650-BAC  
Bsu1630a
+ 1700312..1700527 Uncharacterized conserved protein, possibly involved in motility
 
fliL
+ 1700524..1700946 flagellar protein COG1580  
fliM
+ 1700980..1701978 flagellar motor switch protein COG1868 fliM-BAC  
fliY cheD + 1701968..1703104 flagellar motor switch protein COG1776  
cheY cheB + 1703130..1703492 two-component response regulator COG0784 x0812-BAC-1 x0812-BAC-2  
fliZ
+ 1703507..1704166 flagellar protein COG3190  
fliP
+ 1704159..1704824 flagellar protein COG1338  
fliQ
+ 1704839..1705108 flagellar protein COG1987 x0122-BAC  
fliR
+ 1705116..1705895 flagellar protein COG1684 fliR-BAC  
flhB
+ 1705895..1706977 flagella-associated protein COG1377 x0186-BAC  
flhA
+ 1707010..1709043 flagella-associated protein COG1298 flhA-BAC  
flhF
+ 1709043..1710143 flagella-associated protein COG1419  
ylxH
+ 1710134..1711030
COG0455  
cheB cheL + 1711032..1712105 methyl-accepting chemotaxis proteins (MCP)-glutamate methylesterase and two-component response regulator-like COG2201  
cheA cheN + 1712111..1714126 two-component sensor histidine kinase COG0643  
cheW
+ 1714148..1714618
COG0835 cheW-BAC-1 cheW-BAC-2  
cheC ylxJ + 1714637..1715266
COG1776  
cheD ylxK + 1715263..1715763
COG1871  
sigD flaB + 1715786..1716550 RNA polymerase sigma-28 factor (sigma-D) COG1191 sigD-BAC  
ylxL
+ 1716579..1717082

 

Operon evidence: RNAse protection assay; insertional mutagenesis; deletion of the promoter upstream of flgB
Reference: Werhane H, et al. (2004), Marquez-Magana LM & Chamberlin MJ (1994), Estacio W, et al. (1998)
Comments: Some readthrough into downstream rpsB. The terminator may be factor-dependent. Internal promoter in front of sigD.

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigA Promoter -44:+3 1690470..1690516 CGAACTTCATAGACTTTATGCCTGTTATTTCTTACAATAAGCATATA West JT, et al. (2000): PE DP, Western blot
Estacio W, et al. (1998): PE
SigD Promoter -41:+11 1690311..1690362 CATTTTTCTTCAAAAAGTTTCAAAAATGCCGAAAAGAAAGGAGAAAAAACAG Gilman MZ, et al. (1984): RNA probes
Estacio W, et al. (1998): PE
SigA Promoter -44:+7 1715726..1715776 ATATTCGAACTGTTAAACAAGGTGAAAAAACGATTTAATTAAGGTATTAGG Allmansberger R (1997): PE DP

Terminator

No Data

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai