Regulated Operon: gabR

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
gabR ycnF - 439593..441032 transcriptional regulator (GntR/MocR family) COG1167  

Operon evidence: Genome analysis
Reference:
Comments:

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
GabR Negative ND ND ND Belitsky BR & Sonenshein AL (2002): PE SDM
SigA Promoter -45:+6 441073..441123 TCGGTATTTTCTTATCATTCTGACTTCTCTTTGGTATGATGAAAAGTACCA Belitsky BR & Sonenshein AL (2002): PE

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
ATTTGGCAACCTGCACATCTGCACAGGTGCTGCACGTTTTTTCTTTTGCTT
     >>>>>>>>>>    <<<<<<<<<<<<<<
439398..439425
168..195
-11.9
 gabR

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai