Regulated Operon: gapB-speD

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
gapB
- 2966072..2967094 glyceraldehyde-3-phosphate dehydrogenase COG0057 gapA-BAC-2 stu1788-LAB  
speD ytcF - 2965453..2965839 S-adenosylmethionine decarboxylase COG1586 speD-BAC  

Operon evidence: Northern blotting (1.8 kb transcript)
Reference: Sekowska A, et al. (2000)
Comments: The internal promoter in front of speD leads to a 0.6 kb monocistronic speD transcript.


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
YqzB Negative -40:+42 2967099..2967180 ATGTACTGGCGAATTTGTTTTAATGTGTTATACTAATTTTAGATAGTAACAAATTAGGATGGCATAATTGATAAGGGGTGTC Servant P, et al. (2005): RG DB GS FT
SigA Promoter -48:+10 2967131..2967188 TTATCAATATGTACTGGCGAATTTGTTTTAATGTGTTATACTAATTTTAGATAGTAAC Servant P, et al. (2005): PE
SigA Promoter -40:+6 2965967..2966012 GCACCTTGCAAATTAGACTTAAACACAGTATACTATTTTTCGTGAA Sekowska A, et al. (2000): PE NB

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
CAAAGGGAGCTGAAGCTAGAAAGCCATTATGCGCTTTTTAGCTTATGCTCCTTTTATTTTTATAAA
     >>>>>>>>>>>>>>>>>>>>>   <<<<<<<<<<<<<<<<<<<<<<
2965387..2965432
21..66
-30.1
speD

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai