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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | gapB-speD |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| gapB | - | 2966072..2967094 | glyceraldehyde-3-phosphate dehydrogenase | COG0057 | gapA-BAC-2 stu1788-LAB | |
| speD | ytcF | - | 2965453..2965839 | S-adenosylmethionine decarboxylase | COG1586 | speD-BAC |
| Operon evidence: | Northern blotting (1.8 kb transcript) |
|---|---|
| Reference: | Sekowska A, et al. (2000) |
| Comments: | The internal promoter in front of speD leads to a 0.6 kb monocistronic speD transcript. |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| YqzB | Negative | -40:+42 | 2967099..2967180 | ATGTACTGGCGAATTTGTTTTAATGTGTTATACTAATTTTAGATAGTAACAAATTAGGATGGCATAATTGATAAGGGGTGTC |
Servant P, et al. (2005): RG DB GS FT |
| SigA | Promoter | -48:+10 | 2967131..2967188 | TTATCAATATGTACTGGCGAATTTGTTTTAATGTGTTATACTAATTTTAGATAGTAAC |
Servant P, et al. (2005): PE |
| SigA | Promoter | -40:+6 | 2965967..2966012 | GCACCTTGCAAATTAGACTTAAACACAGTATACTATTTTTCGTGAA |
Sekowska A, et al. (2000): PE NB |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| CAAAGGGAGCTGAAGCTAGAAAGCCATTATGCGCTTTTTAGCTTATGCTCCTTTTATTTTTATAAA >>>>>>>>>>>>>>>>>>>>> <<<<<<<<<<<<<<<<<<<<<< |
speD |
|