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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | gerKACB |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| gerKA | + | 419678..421312 | gerKA-BAC | |||
| gerKC | + | 421302..422525 | ||||
| gerKB | + | 422550..423671 |
| Operon evidence: | Genome analysis; upstream and downstream gene are on the opposite strand |
|---|---|
| Reference: | |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigG | Promoter | -42:+12 | 419615..419668 | TAATGCATAATCTCAATTTTAAAAGGAAGAATATGAGAAAACGACAAGGAAAGG |
Igarashi T & Setlow P (2006): 5'-RACE-PCR, RT-PCR, DB OV DP |
| SpoVT | Negative | ND | ND | ND |
Igarashi T & Setlow P (2006): RT-PCR, DB |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AAAAAAATGATAAAAAGAGCGGGGGGATGCGGCCGCCGCTCTTTTTATGTTCACTT >>>>>>>> <<<<<<<<< |
gerKB |
|