Transcription factor: SigG

Factor type ND
SWISS-PROT P19940
SubtiList BG10236
Consensus seq. GHATR(-35), GG-CATXHTA(-10)
Comment RNA polymerase sporulation-specific sigma factor (Sigma G). Control of transcription in the forespore at late stages of sporulation. Null mutations prevent activation of Sigma K. Inactive in a spoIIIA mutant.
Link to Phylogenetic profile, Weight matrix, Motif alignment & Similar conserved hexameric motifs

Operon Regulated Gene Absolute position Location Binding seq.(cis-element) Experimental evidence
csbX-bofC bofC 2836668..2836714 -42:+5 ATAAAACGGTTAAGCAGTAGCCTCTTTGGTCAAACTAATCATAAACG Gomez M & Cutting SM (1997): PE RG
csgA-ybxH csgA 227980..228033 None ATTTTTCGCGTATGGATTTTCCCTATTTTAGCAAGCTATAGGGTAAAGATAGCA Shchepetov M, et al. (1997): DB RG
dacF-spoIIAAB-sigF dacF 2445475..2445514 -37:+3 GGCGTATAAAACCATCACGCTTGGAAAAAATAAAAAGGAT Schuch R & Piggot PJ (1994): DB RG OV
exoA-ccpB exoA ND ND ND Salas-Pacheco JM, et al. (2005): NB RG DB
gerAABC gerAA 3389741..3389781 -39:+2 CACAGTATATCATTTTTTTAACAGGAAAAGATAACCTCTAC Feavers IM, et al. (1990): RG PE
gerBABC gerBA 3687763..3687816 -43:+11 TTTTCCTCGATAAGAATAATTCTCCTTTTTTGATACAAATTAATAAAAACCGTC Corfe BM, et al. (1994): PE
gerD gerD 159080..159138 -39:+20 GTTATGTATAATTCCAAACAGATGAATCATATTAAAGGTAAGACAAGTATGTGAAAGGA Kemp EH, et al. (1991): RG DB OV PE RO
gerKACB gerKA 419615..419668 -42:+12 TAATGCATAATCTCAATTTTAAAAGGAAGAATATGAGAAAACGACAAGGAAAGG Igarashi T & Setlow P (2006): 5'-RACE-PCR, RT-PCR, DB OV DP
glcU-gdh glcU 443958..444004 -40:+7 TTCCGGCGAATAATCACAACAATTCCAGCCAAAATAACAGCAAATAC Rather PN & Moran CP Jr (1988): PE, promoter mutation
gpr gpr 2634856..2634897 -39:+3 TTTAGCATGATTTATTCAGCAAATGGCAACAATATAGGTACT Sussman MD & Setlow P (1991): RG PE DB OV, in-vitro transcription
rsfA rsfA ND ND ND Juan Wu L, et al. (2000): RG DB OV
spoIIGA-sigE-sigG sigG 1604857..1604915 -40:+19 GCAGTGCATATTTTTCCCACCCAAGGAGATACTTAACGTTGTACAGCAGCTCCTGTAGG Sun DX, et al. (1991): PE RG
sleB-ypeB sleB 2399295..2399341 -41:+6 AAAGAGTGTATAAAAATAACCTCGTTACAGAAAATACGATTACACTT Moriyama R, et al. (1999): NB PE HB DB
splAB splA 1460706..1460749 -40:+4 TTTTTTTCATAAGTAAGGGTATAGAAGGACACAATAACATGGCT Pedraza-Reyes M, et al. (1994): RG DB OV PE RO
Pedraza-Reyes M, et al. (1997): SDM RG
splAB splB 1461014..1461058 -41:+4 TACAACTCATATCCTTTCCGCCTAGTGAGAAAAGTAACGTTAGTA Pedraza-Reyes M, et al. (1994): RG DB OV PE
Pedraza-Reyes M, et al. (1997): DB RG OV
spoIVB spoIVB 2519667..2519708 -39:+3 CAGTTATAAATAAGCCGTCAGAAGGCAAAATTAAATGATGTA Gomez M, et al. (1996): PE DB RG
spoVAABCDEF-lysA spoVAA 2442500..2442557 -37:+21 GATGAATGAGAACAAAATCGAACCACATACTACATATATAACCACCGAAAGATGGTGA Moldover B, et al. (1991): PE
Sun DX, et al. (1989): DB RG
spoVT spoVT 63977..64016 -37:+3 GGTGTATATTACATTTGATGTGACGGATACTAATTTCAAG Bagyan I, et al. (1996): RG DB OV PE
sspA sspA 3024699..3024749 -39:+12 TTCTGAATGAAGCCATGTGTTTTGACACATTCTATACTCACAAGGAGGTGA Nicholson WL, et al. (1989): PE RO, nuclease protection
sspB sspB 1049652..1049698 -40:+7 CTCCGCATGATTTTCCGGCCATTTTAACATAATACGTAGTAACAAGC Fajardo-Cavazos P, et al. (1991): PE, promoter mutations, RG
Nicholson WL, et al. (1989): PE RO
sspC sspC 2155358..2155403 -39:+7 GCGTGTATAAATTAAAATAATCTCTCCATAATATGATTCAAACAAG Nicholson WL, et al. (1989): nuclease protection, RO
sspD sspD 1413334..1413380 -39:+8 GCCAGCATAAATAAACCCCGTATATTTCAAACTAAATACGCGTTAAG Nicholson WL, et al. (1989): nuclease protection, RO
yfhQ-fabL-sspE sspE 937180..937229 -40:+10 AGAGGAATAGCTATACGATCACCTGCACATTCTAATGACCGTGGAGGTGA Fajardo-Cavazos P, et al. (1991): PE, promoter mutations, RG
Nicholson WL, et al. (1989): PE, nuclease protection, RO
Sun DX, et al. (1989): RO, nuclease protection, SDS-PAGE, RG, RNAP purification, in-vitro transcription
sspF sspF 53081..53131 -39:+12 TTTAACGAAAGTTCCATCTGATTTAACAAAAGATAAAACAGTCACATATTA Stephens MA, et al. (1984): S1 DP RG DB
acoR-sspH sspH 884908..884949 -40:+2 TAAAGCATACTTCCTTCAGGAAATGGAAACGTTATGTATTGA Cabrera-Hernandez A, et al. (1999): PE RG
sspI sspI 2930688..2930734 -43:+4 AGAACAGCACATAATAAACCAGGTGCAGGGTTAGAATATACGTATTA Cabrera-Hernandez A & Setlow P (2000): PE
sspI sspI 2930667..2930713 -43:+4 ACATGATGTTATTATATCGCAAGAACAGCACATAATAAACCAGGTGC Cabrera-Hernandez A & Setlow P (2000): PE
sspJ sspJ 3420662..3420704 -40:+3 TATCCCGCATAATTTTTCAGGAAAAAGGCATCTTAAACATGTA Bagyan I, et al. (1998): DB OV PE RG
sspK sspK 927648..927694 -41:+6 TAACGCTTTATTACGTGGTGTTCTCCATATACTAACCTTACGTCTTC Cabrera-Hernandez A & Setlow P (2000): PE
sspL sspL 2310004..2310051 -39:+9 AAAAGAATTAAATCTTGATCATTGGTTCATCCTAATGGCGAGGTGAAC Cabrera-Hernandez A, et al. (1999): PE RG DB OV
sspM sspM 2338812..2338858 -41:+6 AAAAATTGTATGATCCTCCTCATTAATGCAAACGATACTTGTGAGGA Cabrera-Hernandez A & Setlow P (2000): PE
sspN-tlp sspN 1929419..1929471 -40:+13 GTATTCATGTTTACCCCTCCTTTTGAGAAACCTATCTGTTGAGGAGGGATAAA Cabrera-Hernandez A, et al. (1999): PE DB OV RG
sspOP sspO 1925666..1925714 -41:+8 GCTCTCTCATATAACACAATAAAAGAAGCCATATTATGATTGAGGTGAT Cabrera-Hernandez A & Setlow P (2000): PE
ybaK-cwlD ybaK 156046..156092 -42:+5 AATTCGGGCATTGTTTCATCATCCAAACCTCAAAATAATCGGTAAAA Sekiguchi J, et al. (1995): PE NB DB
yckD yckD 369270..369334 -35:30 TTATGCATAAAAAATACAAGGCAGCAAAACATATGAAAAATAGGATTGGAGGAATAAAATGGATG Wang S, et al. (2006): AR, Race-PCR
ydfR ydfR 600388..600456 -40:+29 GACAGAATGAACCGACTGCCTTTCGGATATATTAAATTGCGATTGGCCGGAAGAAAAGCCAATCCCATG Wang S, et al. (2006): AR, Race-PCR
ydfS ydfS 600463..600513 -37:+14 CGAACAATATTTTTGGTATAGATGGATATATTAAGCCAAACAATGATAGCA Wang S, et al. (2006): AR, Race-PCR
yfjS yfjS ND ND ND Fukushima T, et al. (2002): RG NB
yfkED yfkD ND ND ND Kuwana R, et al. (2002): SDS-PAGE, RG
yhcN yhcN 988294..988340 -40:+7 TTTGCATGCATAATTAAAGCCAGTTAGAAAAACCTATAAGTAAAGTG Bagyan I, et al. (1998): PE DB OV RG
yhcQ yhcQ 990597..990665 -39:+30 TTCTGCATAATACACGGCAGACTGACACAAAATACAGCTGATCTGAAAAAAAAGGAGGAATTCGGTTTG Wang S, et al. (2006): AR, Race-PCR
yhcV yhcV 996454..996511 -39:+19 CCCTTTTTAAACGGCTCGTGTCTGAACATACTAATGATTGAAAGGGGTGCTGACAATG Kuwana R, et al. (2002): SDS-PAGE, RG
Wang S, et al. (2006): AR, Race-PCR
yisY yisY ND ND ND Kuwana R, et al. (2002): SDS-PAGE, RG
yitGF yitG 1176556..1176618 -40:+23 CGCTGAATAAACGAAGCCATCAGGGACATTCTAAGCAGAAGAAAAGGAGTGTGCTCTGAGATG Wang S, et al. (2006): AR, Race-PCR
ykvUV ykvV 1449888..1449929 -33:+9 AAGGATGATAAAGGAACAGCAGGGGCAAGCTAATTGAAAAGC Imamura D, et al. (2004): NB PE RG, immunoblot analysis
ylaJ ylaJ ND ND ND Kuwana R, et al. (2002): SDS-PAGE, RG
yndDEF yndD 1906522..1906567 -38:+8 ACGAACATAAAAAATAGGTATACGGGAAAAATAATCCTATTAGAGA Wang S, et al. (2006): AR, Race-PCR
yoaR yoaR 2042047..2042106 -40:+20 AAATACATCAAAGGATAAGCGGCTGTTCATACTAATGATTGGGAGGTAAACCGACTTATG Wang S, et al. (2006): AR, Race-PCR
yozQ yozQ 2027988..2028035 -38:+10 AAGTGCATGAATACCTGCCCAACAGACAGAATAAGAAGAGTTGATATT Wang S, et al. (2006): AR, Race-PCR
ypzA ypzA 2307641..2307694 -38:+16 GGTACATAAATTTCAAAAAAACTCTGCAAAATAATGGCGGAGGTGTTTTTTGTG Wang S, et al. (2006): AR, Race-PCR
yqfSU yqfS 2593458..2593502 -40:+5 AGCCTGGGTATAAAAAGAAAATGAGCTATGAGATGGAGAAAATCA Urtiz-Estrada N, et al. (2003): PE NB RT-PCR
yraGF-adhB-yraED yraG 2751966..2752029 -39:+25 TTCTGTATGCTTCAACTTCATTTCGGGAAATGTAACGTTGATAAAAGGAGGTTACATCAATATG Wang S, et al. (2006): AR, Race-PCR
yrrD yrrD 2805408..2805461 -39:+15 CATCGTATGAGTCTAAGGCGCAAAGCAAAACCTAAGCCTGTTCAACAAAAGGTG Wang S, et al. (2006): AR, Race-PCR
yteA yteA 3152987..3153056 -38:+32 TTATGAAAGTTCTCAGGCGATCTGTTCATACTAAAGGTATGCATCACAGAGAAACGAGGCGATCACATTG Wang S, et al. (2006): AR, Race-PCR
yuzA yuzA 3223835..3223907 -38:+35 GCATGTATAGATTCTCCAATATGTCACAATCTATAACTGTTTTAATAATTCATGGAGGAGGTTGCAAAACATG Wang S, et al. (2006): AR, Race-PCR
yvaB yvaB 3445105..3445180 -38:+38 GACAGAATAATCATTATGCATCTGTATGATAATAATTGATGTGTGATTTTTAAAAACGAAAGGGCTGGTAAAAATG Wang S, et al. (2006): AR, Race-PCR
yvdP yvdP ND ND ND Kuwana R, et al. (2002): SDS-PAGE, RG
yvdQ yvdQ 3541719..3541791 -39:+34 GAAACATAAATGTTCCTCCGCTTGGGCACGTTATGAAATGTGCAATATTGAATATGGGAGGAGAATGAGCATG Wang S, et al. (2006): AR, Race-PCR
sacB-yveBA yveA 3538128..3538172 -39:+6 AGCGGTATTCTCTGTTACATATTGGGCATTGTAAGGAATATAAGG Wang S, et al. (2006): AR, Race-PCR
ctpB yvjB 3622857..3622909 -39:+14 GATTACATGAAATCTCCATCCTTTACATATACTATCTCTAGGTTTTGGTAAAG Wang S, et al. (2006): AR, Race-PCR
ywhE ywhE 3848772..3848817 -42:+4 TTCTGCGATGTTTAAAAACGATCTTTTTTTCTCATAATAGTAGAAA Pedersen LB, et al. (2000): RG PE
yxeD yxeD 4065153..4065227 -39:+36 GACGGAATTTCTTTTCATTCAAGTTGCATGATAATACCGACTCACGTCAATCGATACATGGAGGGATCATTCATG Wang S, et al. (2006): AR, Race-PCR




Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai