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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | gerPABCDEF |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| gerPA | yisH | - | 1149511..1149732 | spore germination protein | ||
| gerPB | yisG | - | 1149263..1149505 | spore germination protein | gerPB-BAC | |
| gerPC | yisF | - | 1148623..1149240 | spore germination protein | gerPC-BAC | |
| gerPD | yisE | - | 1148450..1148626 | spore germination protein | ||
| gerPE | yisD | - | 1148049..1148450 | spore germination protein | ||
| gerPF | yisC | - | 1147799..1148026 | spore germination protein | gerPF-BAC-1 gerPF-BAC-2 |
| Operon evidence: | Genome analysis |
|---|---|
| Reference: | |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| GerE | Negative | ND | ND | ND |
Behravan J, et al. (2000): DB RG Eichenberger P, et al. (2004): DB AR |
| SigK | Promoter | ND | 1149811..1149849 | TTTCTCTCACGCATATGTGCGTTTGTCATAAGCTATCGT |
Behravan J, et al. (2000): OV RG Eichenberger P, et al. (2004): HM |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| GGAAACGGATAAAAGCAGCCGCTCTGCAAAGAGAGGGCTGCTTTTTAGTCATTTTT >>>>>>>>>>> <<<<<<<<<<<< |
gerPF |
|