 |
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | glyA |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| glyA | glyC, ipc-34d | - | 3788213..3789460 | serine hydroxymethyltransferase | COG0112 | glyA-BAC glyA-STA |
| Operon evidence: | Genome analysis |
|---|---|
| Reference: | Genbank Z38002, Genbank L47648 |
| Comments: | no terminator identified in Genbank L47648 |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| LrpA | Negative | ND | ND | ND |
Dartois V, et al. (1997): DB |
| LrpB | Negative | ND | ND | ND |
Dartois V, et al. (1997): DB |
| PurR | Negative | -120:-61 | 3789564..3789623 | AATAAATTCCGAACTTTAAATTAAATTTAAGTTATTAATATTCGTTTTTACCAATAAAAA |
Saxild HH, et al. (2001): HM DB RG DP SDM |
| SigA | Promoter | -41:+5 | 3789499..3789544 | ATCTTTTACATCGGCCTTAAAAACCATGTACAATAGTGATGGTAAA |
Saxild HH, et al. (2001): PE RG |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| TAAAACCCGCTTGGGCTTATGCCCGGCGGGTTTTTTGACGATGTT >>>>>>>>>>> <<<<<<<<<< |
glyA |
|