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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | katE-yxiS |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| katE | katB | - | 4007161..4009221 | catalase 2 | COG0753 | x0451-BAC katB-BAC x0451-BAC |
| yxiS | - | 4006821..4007111 |
| Operon evidence: | Northern blotting (2.5 kb transcript measured by Yoshida; 2.4 kb transcript measured by Engelmann) |
|---|---|
| Reference: | Engelmann S, et al. (1995), Yoshida K, et al. (2000) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| SigB | Promoter | -40:+4 | 4009250..4009293 | TAGCAGTTTATATGAAGAACGCCACGGGTAAATGTGCTGTAGAA |
Engelmann S, et al. (1995): HB NB DB PE |
| unknown | Promoter | -50:+10 | 4009666..4009725 | CTGTGCCTACGGCGATTTTAAACGGATCTCCTTTGACAAACGATAAGATTTTGGCAATGA |
Engelmann S, et al. (1995): PE |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AAAAAGAGACATCCTGTGTCTCTTTTTTTATTGGAAA >>>>>>> <<<<<<< |
yxiS |
|